View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3644_low_11 (Length: 269)

Name: NF3644_low_11
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3644_low_11
NF3644_low_11
[»] chr3 (14 HSPs)
chr3 (19-262)||(24113921-24114164)
chr3 (57-245)||(24106928-24107116)
chr3 (80-244)||(24616660-24616824)
chr3 (23-77)||(23693729-23693783)
chr3 (23-77)||(23712169-23712223)
chr3 (23-77)||(23730625-23730679)
chr3 (23-77)||(23749080-23749134)
chr3 (44-100)||(24101976-24102032)
chr3 (129-200)||(23693653-23693725)
chr3 (129-200)||(23712093-23712165)
chr3 (129-200)||(23730549-23730621)
chr3 (129-200)||(23749004-23749076)
chr3 (79-165)||(23690206-23690296)
chr3 (79-165)||(24062443-24062533)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 24113921 - 24114164
Alignment:
Q  19 gctaatactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgagaatcaagtcataacaacg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  24113921 gctaatactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgagaatcaggccgtaacaacg 24114020  T
Q  119 taatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctcacataactgcatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24114021 taatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctgacataactgcatt 24114120  T
Q  219 aactttaatgccttctaaatgaaggagaatgcacaagatctctg 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24114121 aactttaatgccttctaaatgaaggagaatgcacaagatctctg 24114164  T

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Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 24106928 - 24107116
Alignment:
Q  57 aattcaatggagaaactaatccagatatacttcctctggatgagaatcaagtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaa 156  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||    
T  24106928 aattcagtggagaaactaatcctgatatacttcctctggatgagaatcaggtcataacaacgtaatccaacaaaaacataactgcattaatattaacaaa 24107027  T
Q  157 tcccgcaaaatataggcggaagaattaaagtaatttaataaagatgctcacataactgcattaactttaatgccttctaaatgaaggag 245  Q
    ||||||||||| ||| |||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  24107028 tcccgcaaaatttagacggaagaattaaagtactttcataaagatgctgacataactgcattaacattaatgtcttctaaatgaaggag 24107116  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 80 - 244
Target Start/End: Complemental strand, 24616824 - 24616660
Alignment:
Q  80 gatatacttcctctggatgagaatcaagtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaaatataggcggaaga 179  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||     
T  24616824 gatatacttcctatggatgagaatcaggtcataacaacataatccaacaaaaacataactgcattaatattaacaaatcccgcaaaatttagacggaagt 24616725  T
Q  180 attaaagtaatttaataaagatgctcacataactgcattaactttaatgccttctaaatgaagga 244  Q
    |||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||||||    
T  24616724 attaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaagga 24616660  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 23693783 - 23693729
Alignment:
Q  23 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 77  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23693783 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23693729  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 23712223 - 23712169
Alignment:
Q  23 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 77  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23712223 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23712169  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 23730679 - 23730625
Alignment:
Q  23 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 77  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23730679 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23730625  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 23749134 - 23749080
Alignment:
Q  23 atactctaattcattcatcacagtacagtagatcaattcaatggagaaactaatc 77  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  23749134 atactctaattcattcatcacagtacagtagaccaattcagtggtgaaactaatc 23749080  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 24101976 - 24102032
Alignment:
Q  44 agtacagtagatcaattcaatggagaaactaatccagatatacttcctctggatgag 100  Q
    ||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||    
T  24101976 agtacagtagaccaattcaatggagaaagtaatcctgttatacttcctctggatgag 24102032  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 23693725 - 23693653
Alignment:
Q  129 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 200  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23693725 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23693653  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 23712165 - 23712093
Alignment:
Q  129 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 200  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23712165 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23712093  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 23730621 - 23730549
Alignment:
Q  129 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 200  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23730621 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23730549  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 129 - 200
Target Start/End: Complemental strand, 23749076 - 23749004
Alignment:
Q  129 aaaacataactgcattaatattaacaaatcccgcaaaatataggc-ggaagaattaaagtaatttaataaaga 200  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||| | |||| |||||||| |||||||||||||    
T  23749076 aaaacataactgcattagtattaacaaatcccataaaatttagacgggaataattaaagcaatttaataaaga 23749004  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 23690296 - 23690206
Alignment:
Q  79 agatatacttcctctggatgagaatcaa----gtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaa 165  Q
    ||||||||||||||||||| ||||||||    |||||||||| ||||||| |  ||||||||||  ||||||||| | |||||||| ||||    
T  23690296 agatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 23690206  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 24062533 - 24062443
Alignment:
Q  79 agatatacttcctctggatgagaatcaa----gtcataacaacgtaatcctacgaaaacataactgcattaatattaacaaatcccgcaaa 165  Q
    ||||||||||||||||||| ||||||||    |||||||||| ||||||| |  ||||||||||  ||||||||| | |||||||| ||||    
T  24062533 agatatacttcctctggatcagaatcaatcaggtcataacaatgtaatccaataaaaacataacaacattaatataagcaaatcccacaaa 24062443  T

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