View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_13 (Length: 252)
Name: NF3644_low_13
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 18019424 - 18019658
Alignment:
| Q |
18 |
caagtaagaaagaccttcagcagctccaagagcaatcatgaatcgagtcggccactccaaattacttgcagaaccatgcaataattcacctaagctacct |
117 |
Q |
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| T |
18019424 |
caagtaagaaagaccttcagcagctccaagagcaatcatgaatcgagtcggccactccaaattacttgcagaaccatgcaataattcacctaagctacct |
18019523 |
T |
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| Q |
118 |
ctttccatgtactcataaagtaggagatttgaaccttggtgatagcaaaagccgtacagcttcactatattccgatgccttatccttcctagagtcgata |
217 |
Q |
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| T |
18019524 |
ctttccatgtactcataaagtaggagatttgaatcttggtgatagcaaaatccgtacagcttcactatattccgatgccttatccttcctagtgtcgata |
18019623 |
T |
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| Q |
218 |
tttcagccctgaaactattatcgacgttgttccct |
252 |
Q |
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| T |
18019624 |
tttcagccctgaaactattatcgacgttgttccct |
18019658 |
T |
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