View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_14 (Length: 250)
Name: NF3644_low_14
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 10560574 - 10560343
Alignment:
| Q |
14 |
agagaatgtaaactcacccatcatctatgaagcactgtcacatgaataattgaatgtaatgtccacatgtgttggtcaaagacactaacacgtaccgtac |
113 |
Q |
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| T |
10560574 |
agagaatgtaaactcacccatcatctatgaagcactgtcacataaataattgaatgtaatgtccacatgtgttggtcaaagacactaacacgtacc---- |
10560479 |
T |
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| Q |
114 |
cagatatcaagcacgcttcaatctgaaatcttaacgctatatactacataagaattcataaatgttcctttggtacagacttagttagaaacaaataaac |
213 |
Q |
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| T |
10560478 |
-agacatcaagcacacttcaatctgaaatcttaacgctatatactacataagaattcataaatgttcctttagtacagatttagttagaaacaaataaac |
10560380 |
T |
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| Q |
214 |
tgatccattgcatatcagtcatacttataaacatcat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
10560379 |
tgatccattgcatatcagtcatacttataaacatcat |
10560343 |
T |
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