View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_16 (Length: 238)
Name: NF3644_low_16
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_16 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 10560030 - 10560255
Alignment:
| Q |
17 |
attaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatattatcaatacttttgtcgcatgctccactctgtc |
116 |
Q |
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| T |
10560030 |
attaatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttattatattatcaatacttttgtcacatgctccactctgtc |
10560129 |
T |
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| Q |
117 |
atgctacattataaattccctttagttcccaaaatgtgcagagaacagaagaaatatcatattatgaaagtctcacaactggaccaca----ataggcca |
212 |
Q |
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| T |
10560130 |
atgctacattataaattccctttagttcccaaaatgtgcagagaacagaagaaatatcatattatgaaagtctcacagctggaccacaatatataggcca |
10560229 |
T |
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| Q |
213 |
ttaaagatttgaaactcaattcacca |
238 |
Q |
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| T |
10560230 |
ttaaagatttgaaactcaattcacca |
10560255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 9843065 - 9842989
Alignment:
| Q |
20 |
aatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatattatcaatacttttgt |
98 |
Q |
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| T |
9843065 |
aatccatcattcatgtaatatcaagcatatat--ttaatgaatgcaatagtggacttattatattatcaatatttttgt |
9842989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9825846 - 9825907
Alignment:
| Q |
20 |
aatccatcattcatgtaacatcaagtatatatatttgatgaatgcaatactggacttgttatat |
83 |
Q |
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| T |
9825846 |
aatccatcattcatgtaatatcaag--catatatttaatgaatgcaatagtgggcttattatat |
9825907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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