View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_17 (Length: 236)
Name: NF3644_low_17
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 10820656 - 10820769
Alignment:
| Q |
109 |
aaattatacttgtgactttcttacatacaattaatttcat-tttttaaataattacgcttggatcatttaaatttaggtattgatggacttcacttcatt |
207 |
Q |
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| T |
10820656 |
aaattataattgtggctttcttacctacaattactttcatatttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttcatt |
10820755 |
T |
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| Q |
208 |
gcacgagacataac |
221 |
Q |
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| T |
10820756 |
gcacgtgacataac |
10820769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 1630050 - 1629929
Alignment:
| Q |
109 |
aaattatacttgtgactttcttacat----acaattaatttcatttttta-----aataattacgcttggatcatttaaatttaggtattgatggacttc |
199 |
Q |
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| T |
1630050 |
aaattatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttc |
1629951 |
T |
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| Q |
200 |
acttcattgcacgagacataac |
221 |
Q |
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| T |
1629950 |
acttcattgcacgagacataac |
1629929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 1606687 - 1606631
Alignment:
| Q |
165 |
cttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataac |
221 |
Q |
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| T |
1606687 |
cttggatcatttaaatttaggtattgatggacttcacttcattgcacgtgacataac |
1606631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 1623809 - 1623756
Alignment:
| Q |
165 |
cttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacat |
218 |
Q |
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| T |
1623809 |
cttgaatcttttaaattcaggcattgatggacttcatttcattgcacgtgacat |
1623756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 18781503 - 18781447
Alignment:
| Q |
165 |
cttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataac |
221 |
Q |
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| T |
18781503 |
cttgaatcttttaaattcaggcattgatggacttcatttcattgcccgcgacataac |
18781447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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