View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_19 (Length: 208)
Name: NF3644_low_19
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 13045526 - 13045705
Alignment:
| Q |
11 |
gagcagagaaaatggaaaatgaaagcacttattttgtgtgattaattgcatggtgttgtcattttctcctctatgtttgagtctaaccctctactgactc |
110 |
Q |
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| T |
13045526 |
gagcaaagaaaatggaaaatgaaagcacttattttgtgtgattaattgcatggtgttgtcattttctcctctatgtttgagtctaaccctctactgactc |
13045625 |
T |
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| Q |
111 |
tcaggactatactgcctataatcatactaagcttcaaaacacagacaaaagacaattctctcccttacctatgtatgtct |
190 |
Q |
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| T |
13045626 |
tcaggactatactgcctataatcatactaagcttcaagacacaggcaaaagacaattctctcccttacctatgtatgtct |
13045705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 8980407 - 8980290
Alignment:
| Q |
17 |
agaaaatggaaaatgaaagcacttattttgtgtgattaattgcatggtgttgtcattttctcctctatgtttgagtctaaccctctactgactctcagga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| | |||||||| || | |
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| T |
8980407 |
agaaaatggaaaatgaaagcacttattttgtgtgattaattgcatggtcttatcaatttctcctctatgtttgagtctaaccctatgctgactcttagaa |
8980308 |
T |
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| Q |
117 |
ctatactgcctataatcata |
136 |
Q |
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| T |
8980307 |
c--cactgcctataatcata |
8980290 |
T |
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