View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_2 (Length: 521)
Name: NF3644_low_2
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 38322097 - 38321588
Alignment:
| Q |
1 |
tgatttatggaaagttttgaaacatcagaaattttggcgagggtgagaagtttaaaagatgtatttaatttagaataagatatagttcatgtttggattg |
100 |
Q |
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| T |
38322097 |
tgatttatggaaagttttgaaccaacagaaattttggcgagggtgagaagtttaaaagatgtatttaatttagaataagatatagttcatgtttggatcg |
38321998 |
T |
|
| Q |
101 |
acggtgagtttgacacaaaaactata-----gtttagggctttaacaaaatcatggtgctactgtgtcaaactcatcgttgttccaaacatgcc-ataga |
194 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| |
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| T |
38321997 |
acggtgagtttgacacaaaaactatactttagtttagggctttaacaaaatcatggtgctactgtgtcaaactcatcattgttccaaacatgtcgataga |
38321898 |
T |
|
| Q |
195 |
ttagataggtaggaagcaatctttacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattcatatgcagctgc |
294 |
Q |
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| T |
38321897 |
ttagataggtaggaagcaatctttacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattcatatgcagctgc |
38321798 |
T |
|
| Q |
295 |
caagctttcatctttcactagctgctcaacctaaaatttcgacaaaaactgttgaaattaaagcagtattaaactaagtcactaaatataatacccatca |
394 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38321797 |
caagctttcatctttcactagctgctcaacctgaaattttgacaaaaactgttgaaattaaagcagtattaagctaagtcactaaatataatacccatca |
38321698 |
T |
|
| Q |
395 |
atggttcctactttcattactataactggcatatagattttcagatttccacctaaagnnnnnnngtaattgttcggcaggactcatagttcacagataa |
494 |
Q |
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| T |
38321697 |
atggttcctactttcattactataactggcatatagattttcagatttccacctaaagtttttttgtaattgttcggtaggactcatagttcacagataa |
38321598 |
T |
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| Q |
495 |
atggacaagt |
504 |
Q |
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| T |
38321597 |
atggacaagt |
38321588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 16292863 - 16292936
Alignment:
| Q |
218 |
tacttgtgccttcggatataggagagttgagttaggataaattcacagaactggtctaacaattcatatgcagc |
291 |
Q |
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||||||||| ||| |||||| |||||||| |||||||||||| ||||||| ||||||| |||||||||||| |
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| T |
16292863 |
tacttgtgctttctgatatatgagagttggtgaaggataaattcaaagaactgatctaacatttcatatgcagc |
16292936 |
T |
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