View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3644_low_4 (Length: 440)
Name: NF3644_low_4
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 424
Target Start/End: Original strand, 44388692 - 44389103
Alignment:
| Q |
6 |
agaagcaaaggatcaagattaaggatagtgaatttcactacgtcaaaatgtaacttaagactaagagaggggaaaaaggagaatccacaatagttcaatc |
105 |
Q |
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| T |
44388692 |
agaagctaaggatcaagtttaaggatagtgaatttcactacgtcaaaatgtaacttaagactaagagaggggaagaaggagaatccacaatagttcaatc |
44388791 |
T |
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| Q |
106 |
aaaacatccacggtatttcaagttttctagccgatacacacaacaattgacttctccatgaatatgagatacttgcatagttcaatattagaggctgaga |
205 |
Q |
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| T |
44388792 |
aaaacatccacggtatttcaagttttctagcagatacacacaacaattgacttctccatgaatatgagata--------gttcaatattagaggttgaga |
44388883 |
T |
|
| Q |
206 |
gaatgaagaatatcttctaagatggatttgacgacaatattgaacgtggcaccattttttactaagctaacaacagtcaaagagtctatttcaacgagaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44388884 |
gaatgaagaatatcttctaagatggatttgacgacaatattgaacgtggcaccattttttactaagctaacaacagtcaaagagtctatttcaacgagaa |
44388983 |
T |
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| Q |
306 |
gtgaatgaatatataaacttccaacgaacttcgagacaaggttgagaccccaagctcagcaaaaatggcaatagaggtttctatgctatgaagctcggag |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44388984 |
gtgaatgaatatataaacttccaacgaacttcgagacaaggttgagaccccaagctcagcaaaaatggcaatagaggtttctatgctatgaagctcggag |
44389083 |
T |
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| Q |
406 |
acatagtat-ggaacgatac |
424 |
Q |
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| T |
44389084 |
acatagtataggaacgatac |
44389103 |
T |
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