View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3644_low_5 (Length: 438)

Name: NF3644_low_5
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3644_low_5
NF3644_low_5
[»] chr3 (12 HSPs)
chr3 (98-306)||(37635401-37635609)
chr3 (98-306)||(37643690-37643898)
chr3 (98-306)||(37638315-37638523)
chr3 (98-306)||(37646603-37646811)
chr3 (98-306)||(37649516-37649724)
chr3 (98-306)||(37652433-37652644)
chr3 (331-428)||(37635280-37635377)
chr3 (331-428)||(37638194-37638291)
chr3 (331-428)||(37646482-37646579)
chr3 (331-428)||(37649395-37649492)
chr3 (332-428)||(37643569-37643665)
chr3 (349-428)||(37652307-37652386)
[»] chr2 (1 HSPs)
chr2 (375-428)||(5884252-5884305)
[»] chr4 (1 HSPs)
chr4 (388-428)||(32388617-32388657)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37635609 - 37635401
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635609 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37635510  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635509 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37635410  T
Q  298 tcttttatc 306  Q
    |||||||||    
T  37635409 tcttttatc 37635401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37643898 - 37643690
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643898 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37643799  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643798 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37643699  T
Q  298 tcttttatc 306  Q
    |||||||||    
T  37643698 tcttttatc 37643690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37638523 - 37638315
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638523 tgagaagtagagtgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 37638424  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638423 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37638324  T
Q  298 tcttttatc 306  Q
    |||||||||    
T  37638323 tcttttatc 37638315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37646811 - 37646603
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37646811 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaat 37646712  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646711 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37646612  T
Q  298 tcttttatc 306  Q
    |||||||||    
T  37646611 tcttttatc 37646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37649724 - 37649516
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37649724 tgagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaagggtggaaaaatgttgaagcaattgtataagaag 37649625  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 297  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649624 gttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctatt 37649525  T
Q  298 tcttttatc 306  Q
    |||||||||    
T  37649524 tcttttatc 37649516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 98 - 306
Target Start/End: Complemental strand, 37652644 - 37652433
Alignment:
Q  98 tgagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaag 197  Q
    ||||||||| ||||||||| |||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  37652644 tgagaagtagagcgttcaacaaggaattcaagatcacaaaatttcgggaaaccaaagatttttgaatgatggaaaaatgttgaagcaatggtataagaag 37652545  T
Q  198 gttacaaatgcgttccatagaaaagcaactatcttcttccagt---aaggaggagataggaaataagagtttcatctcattctctcttttctactattct 294  Q
    |||||||||| |||| ||| ||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  37652544 gttacaaatgtgttcaataaaaaagcaactatcttcttccaataagaaggaggagataggaaataagagtttcatctcattctctcttttctagcatttt 37652445  T
Q  295 atttcttttatc 306  Q
    ||||||||||||    
T  37652444 atttcttttatc 37652433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 37635377 - 37635280
Alignment:
Q  331 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635377 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37635280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 37638291 - 37638194
Alignment:
Q  331 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638291 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37638194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 37646579 - 37646482
Alignment:
Q  331 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646579 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 428
Target Start/End: Complemental strand, 37649492 - 37649395
Alignment:
Q  331 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649492 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37649395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 332 - 428
Target Start/End: Complemental strand, 37643665 - 37643569
Alignment:
Q  332 ggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643665 ggtcgtggagcggtgttagcttttatgctatgccttttaggtgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37643569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 349 - 428
Target Start/End: Complemental strand, 37652386 - 37652307
Alignment:
Q  349 agcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37652386 agctttgatgctatgcctcttaggcgtcaccgtttatggtgaagatccttacatttactatacatggaaggttacctatg 37652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 5884305 - 5884252
Alignment:
Q  375 tcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 428  Q
    |||| ||||| |||||||| |||||||||||||  |||||||| ||||||||||    
T  5884305 tcactgtttatggtgaagacccttacatttacttcacatggaatgttacctatg 5884252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 32388657 - 32388617
Alignment:
Q  388 tgaagatccttacatttactatacatggaaggttacctatg 428  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  32388657 tgaagatccttatgtgtactatacatggaaggttacctatg 32388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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