View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3644_low_6 (Length: 422)

Name: NF3644_low_6
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3644_low_6
NF3644_low_6
[»] chr7 (5 HSPs)
chr7 (1-408)||(44208521-44208928)
chr7 (275-408)||(33172488-33172621)
chr7 (331-408)||(8530248-8530323)
chr7 (205-246)||(32791969-32792010)
chr7 (327-359)||(45249249-45249281)
[»] chr1 (3 HSPs)
chr1 (1-241)||(20613183-20613421)
chr1 (228-263)||(20613129-20613164)
chr1 (254-355)||(50845650-50845751)
[»] chr3 (2 HSPs)
chr3 (265-408)||(37549857-37550000)
chr3 (320-408)||(38931785-38931873)
[»] chr4 (9 HSPs)
chr4 (232-408)||(38870575-38870751)
chr4 (322-408)||(3479175-3479260)
chr4 (275-408)||(51468570-51468703)
chr4 (317-408)||(3140330-3140419)
chr4 (228-284)||(49445045-49445101)
chr4 (328-408)||(53504673-53504753)
chr4 (331-408)||(16502580-16502658)
chr4 (228-293)||(32662242-32662307)
chr4 (326-358)||(54517230-54517262)
[»] chr5 (2 HSPs)
chr5 (317-408)||(29465678-29465769)
chr5 (232-309)||(4471577-4471654)
[»] chr2 (1 HSPs)
chr2 (267-408)||(37422886-37423032)
[»] chr8 (2 HSPs)
chr8 (324-359)||(21661356-21661391)
chr8 (318-392)||(45000141-45000214)
[»] scaffold0493 (1 HSPs)
scaffold0493 (334-402)||(4156-4224)


Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 44208928 - 44208521
Alignment:
Q  1 aatgtaaatcattaagatcatataacataaacgatcacctttatttgggatacccnnnnnnnntaaatacccaatgcatagattaataggaaaggattta 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  44208928 aatgtaaatcattaagatcatataacataaacgttcacctttatttgggatacccaaaaaaaaataatacccaatgcatagattaataggaaaggattta 44208829  T
Q  101 tctaaagaggcacaagactaatccaacccacgtgaacaaaattatatgtggaacacctaattcttttgttaggattatagcataaagggaaattggaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44208828 tctaaagaggcacaagactaatccaacccacgtgaacaaaattatatgtggaacacctaattcttttgtaaggattatagcataaagggaaattggaatt 44208729  T
Q  201 gttgaagcagttaataattattatagaagttagttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcacaaagggtagagagcacc 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44208728 gttgaagcagttaataattgttatagaagttagttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcacaaagggtagagagcacc 44208629  T
Q  301 tttgaatatcgtcttcgtgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtg 400  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  44208628 tttgaatatcgtctttgtgaatagagtattctctattgtgaaggggaaactcttggaggaaagattctctcttattctatcgtgtttcttaaataaagta 44208529  T
Q  401 ttctttct 408  Q
    ||||||||    
T  44208528 ttctttct 44208521  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 408
Target Start/End: Complemental strand, 33172621 - 33172488
Alignment:
Q  275 agagagcacaaagggtagagagcacctttgaatatcgtcttcgtgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctctta 374  Q
    ||||| || ||||| |||||||| ||||||||||| ||||| ||||||||| |||| | ||||||||  ||| ||||||||||   ||||||||||||||    
T  33172621 agagaacataaaggatagagagcgcctttgaatattgtctttgtgaatagattattttgtattgtgattggg-aactcttggaataaagattctctctta 33172523  T
Q  375 ttctatcgt-gtttcttaaataaagtgttctttct 408  Q
    ||||||| |  ||||||||||||||||||||||||    
T  33172522 ttctatcatattttcttaaataaagtgttctttct 33172488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 8530323 - 8530248
Alignment:
Q  331 ctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    ||||||||||||||||||||  ||||| |  |||||||||||| ||||||| |  ||||| |||||||||||||||||    
T  8530323 ctctattgtgaaggggaaacctttggatgagagattctctctt-ttctatcatagttctt-aataaagtgttctttct 8530248  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 32792010 - 32791969
Alignment:
Q  205 aagcagttaataattattatagaagttagttagttagttgag 246  Q
    |||||||||| | || ||||||||||||||||||||||||||    
T  32792010 aagcagttaagagttgttatagaagttagttagttagttgag 32791969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 359
Target Start/End: Complemental strand, 45249281 - 45249249
Alignment:
Q  327 tattctctattgtgaaggggaaactcttggagg 359  Q
    |||||||||||||||||||||||| ||||||||    
T  45249281 tattctctattgtgaaggggaaacccttggagg 45249249  T

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Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 20613421 - 20613183
Alignment:
Q  1 aatgtaaatcattaagatcatataacataaacgatcacctttatttgggatacccnnnnnnnntaaatac-ccaatgcatagattaataggaaaggattt 99  Q
    |||||||||||||||| |||||||||||||||  | ||||||||||  || ||||         |||||| |||||||||||||||||||||||||||||    
T  20613421 aatgtaaatcattaagttcatataacataaacattgacctttatttcagagacccacaaaa---aaatactccaatgcatagattaataggaaaggattt 20613325  T
Q  100 atctaaagaggcacaagactaatccaacccacgtgaacaaaattatatgtggaacacctaattcttttgttaggattatagcataaagggaaattggaat 199  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||  |||    
T  20613324 atctgaagaggcacaagactaatgcaacccacatgaacaaaattatatttgaaacacctaattcttttgttaggattatagcataaagggaaattaaaat 20613225  T
Q  200 tgttgaagcagttaataattattatagaagttagttagttag 241  Q
     ||| ||||||||||||||| |||||||| ||||||||||||    
T  20613224 agttaaagcagttaataattgttatagaatttagttagttag 20613183  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 263
Target Start/End: Complemental strand, 20613164 - 20613129
Alignment:
Q  228 agttagttagttagttgagattgtcatagaaagtat 263  Q
    |||||||||||||||||||||||| |||||||||||    
T  20613164 agttagttagttagttgagattgttatagaaagtat 20613129  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 355
Target Start/End: Complemental strand, 50845751 - 50845650
Alignment:
Q  254 tagaaagtatgtgtaaaaataagagagcacaaagggtagagagcacctttgaatatcgtcttcgtgaatagagtattctctattgtgaaggggaaactct 353  Q
    |||| |||||||||| |||||||| | |||||| | |||| || | ||||| |||| ||  | ||||||||||||  |||| ||||||||||||||| ||    
T  50845751 tagagagtatgtgtataaataagaaaacacaaatgttagaaagtagctttggatattgtaattgtgaatagagtacactctgttgtgaaggggaaaccct 50845652  T
Q  354 tg 355  Q
    ||    
T  50845651 tg 50845650  T

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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 265 - 408
Target Start/End: Original strand, 37549857 - 37550000
Alignment:
Q  265 tgtaaaaataagagagcacaaagggtagagagcacctttgaatatcgtcttcgtgaatagagtattctctattgtgaaggggaaactcttggaggtaaga 364  Q
    |||| ||||| |||| ||||||||| |||||||| ||||||||  ||   | |||||||||||||||||||||||||||||||||||||||||||  |||    
T  37549857 tgtataaataggagaacacaaagggcagagagcatctttgaattacgcaattgtgaatagagtattctctattgtgaaggggaaactcttggaggagaga 37549956  T
Q  365 ttctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    || |||| ||||||||| | ||||||||||||||||||||||||    
T  37549957 ttatctcctattctatcatatttcttaaataaagtgttctttct 37550000  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 38931873 - 38931785
Alignment:
Q  320 aatagagtattctctattgtgaagggg-aaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    ||||||||||| ||||||||||||||| |||| |||||||   |||||||||| || |||||| | |||| ||||||| ||| |||||||    
T  38931873 aatagagtattgtctattgtgaaggggaaaacccttggagtggagattctctccta-tctatcatatttcataaataatgtgctctttct 38931785  T

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Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 232 - 408
Target Start/End: Complemental strand, 38870751 - 38870575
Alignment:
Q  232 agttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcacaaagggtagagagcacctttgaatatcgtcttcgtgaatagagtattc 331  Q
    ||||||||||||||| |||| ||||| |||||||||| |||||||||| |||||||| |||||| || |||||||||| ||  | || ||||||||||||    
T  38870751 agttagttagttgaggttgttatagagagtatgtgtataaataagagaacacaaaggatagagatcatctttgaatattgttattgttaatagagtattc 38870652  T
Q  332 tctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    ||| ||||||| ||||||| |||| |||  ||||| ||||  | |||||| | ||||||||||||  ||||||||||    
T  38870651 tctgttgtgaatgggaaacccttgcaggagagattatctcccactctatcctatttcttaaataacatgttctttct 38870575  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 3479260 - 3479175
Alignment:
Q  322 tagagtattctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    |||||||||||||||||| |||||||||| |||| |||  |||||||||||||||| ||| | ||||||||||||||||||||||||    
T  3479260 tagagtattctctattgtcaaggggaaacccttg-aggagagattctctcttattccatcatatttcttaaataaagtgttctttct 3479175  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 275 - 408
Target Start/End: Complemental strand, 51468703 - 51468570
Alignment:
Q  275 agagagcacaaagggtagagagcacctttgaatatcgtcttcgtgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctctta 374  Q
    ||||| |||||||||||||||||  |||||||||| || | ||| ||||| ||||||||| ||||||||||| ||| ||||||||  |||||||||| ||    
T  51468703 agagaacacaaagggtagagagcgtctttgaatattgtttacgtaaatagtgtattctctgttgtgaagggggaacacttggaggagagattctctcata 51468604  T
Q  375 ttctatcgtgtttcttaaataaagtgttctttct 408  Q
    || ||||   |||| ||||||||| |||| ||||    
T  51468603 ttgtatcacatttcataaataaagagttcattct 51468570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 3140419 - 3140330
Alignment:
Q  317 gtgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    |||||||||||||||| |||||| |||||||||| |||| |||  |||||||||| ||||||||| | |||||||||||||||||| |||||    
T  3140419 gtgaatagagtattctatattgt-aaggggaaacccttg-aggagagattctctcctattctatcatatttcttaaataaagtgttgtttct 3140330  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 49445101 - 49445045
Alignment:
Q  228 agttagttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcaca 284  Q
    ||||||||||||||||||| |||| ||||| |||||||||| |||||||||| ||||    
T  49445101 agttagttagttagttgaggttgttatagagagtatgtgtataaataagagaacaca 49445045  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 408
Target Start/End: Original strand, 53504673 - 53504753
Alignment:
Q  328 attctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    ||||||||||||||||||||||| ||||||||   ||||||| | | ||||||| | |||||||||| ||||||| |||||    
T  53504673 attctctattgtgaaggggaaacccttggaggagtgattctcccctgttctatcatatttcttaaattaagtgttttttct 53504753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 408
Target Start/End: Original strand, 16502580 - 16502658
Alignment:
Q  331 ctctattgtgaaggggaaactcttggaggtaaga-ttctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    |||||||||||||||||||| ||||||||  ||| ||||||| ||||||||| | ||||||||   |||||||||||||    
T  16502580 ctctattgtgaaggggaaacccttggaggagagatttctctcctattctatcatatttcttaatataagtgttctttct 16502658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 32662242 - 32662307
Alignment:
Q  228 agttagttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcacaaagggtaga 293  Q
    ||||| ||||||||||||| |||| ||||  ||| |||||| |||||||||| |||||||||||||    
T  32662242 agttatttagttagttgaggttgttatagggagtgtgtgtataaataagagaacacaaagggtaga 32662307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 358
Target Start/End: Complemental strand, 54517262 - 54517230
Alignment:
Q  326 gtattctctattgtgaaggggaaactcttggag 358  Q
    ||||||||||||||||||||||||| |||||||    
T  54517262 gtattctctattgtgaaggggaaacccttggag 54517230  T

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Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 408
Target Start/End: Original strand, 29465678 - 29465769
Alignment:
Q  317 gtgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    ||||||||||||||||||||||||||||||||||  |||||||  ||||||||| ||  |||||| | ||||||||||||||||||||||||    
T  29465678 gtgaatagagtattctctattgtgaaggggaaacggttggaggagagattctcttttcgtctatcatatttcttaaataaagtgttctttct 29465769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 4471577 - 4471654
Alignment:
Q  232 agttagttagttgagattgtcatagaaagtatgtgtaaaaataagagagcacaaagggtagagagcacctttgaatat 309  Q
    ||||||||||| ||| |||| ||||| |||||||||| |||||||| | |||| |||||  |||||| |||| |||||    
T  4471577 agttagttagtcgaggttgttatagacagtatgtgtataaataagataacacagagggtgaagagcatctttaaatat 4471654  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 408
Target Start/End: Complemental strand, 37423032 - 37422886
Alignment:
Q  267 taaaaataagagagcacaaagggtagagagcacctttgaatatcgtc---ttcgtgaatagagtatt--ctctattgtgaaggggaaactcttggaggta 361  Q
    |||||||| || | |||||||| ||||||| | |||||||||| ||    || |||||||||||||   |||||||||||||| ||||| ||||||||      
T  37423032 taaaaataggacaacacaaaggttagagagtatctttgaatattgtaaagtttgtgaatagagtataacctctattgtgaaggtgaaacccttggaggag 37422933  T
Q  362 agattctctcttattctatcgtgtttcttaaataaagtgttctttct 408  Q
    |||||||||| ||||||||| | |||||| |  ||||||||||||||    
T  37422932 agattctctcctattctatcctatttcttcataaaagtgttctttct 37422886  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 359
Target Start/End: Original strand, 21661356 - 21661391
Alignment:
Q  324 gagtattctctattgtgaaggggaaactcttggagg 359  Q
    ||||||||||||||||||||||||||||||||||||    
T  21661356 gagtattctctattgtgaaggggaaactcttggagg 21661391  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 45000214 - 45000141
Alignment:
Q  318 tgaatagagtattctctattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaa 392  Q
    |||| |||||||||||||||||||||||||||| ||| ||||  | |||||||| | ||||||| | ||||||||    
T  45000214 tgaacagagtattctctattgtgaaggggaaaccctt-gaggagatattctctcctgttctatcctatttcttaa 45000141  T

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Target: scaffold0493 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 4224 - 4156
Alignment:
Q  334 tattgtgaaggggaaactcttggaggtaagattctctcttattctatcgtgtttcttaaataaagtgtt 402  Q
    ||||||||| ||||||| |||| |||  |||||||| | ||||||||| | ||||||||||||||||||    
T  4224 tattgtgaatgggaaacccttgaaggagagattctcccctattctatcatatttcttaaataaagtgtt 4156  T

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