View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3644_low_8 (Length: 397)
Name: NF3644_low_8
Description: NF3644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3644_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 32325202 - 32325473
Alignment:
| Q |
18 |
ggaagtgcttaataattaggcaagagatggggattatgagagtagtatttgcgatggttctggttgttgtggtgatcgttctaagtccttgtttggttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32325202 |
ggaagtgcttaataattaggcaagagatggggattatgagagtagtatttgcgatggttctggttgttgtggtgatcgttgtaagtccttgtttggttaa |
32325301 |
T |
|
| Q |
118 |
tgggagaaactattttcatgagaagacaatggatgttgaaggcatcaactctaccgatatcgatgaagttttacgtggagataatagttctgtggaagac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32325302 |
tgggagaaactattttcatgagaagacaatggatgttgatggcatcaactctaccgataccgatgaagttttacgtggagataatagttctgtggaagac |
32325401 |
T |
|
| Q |
218 |
tcaagtggaagcaagatagggtactcatctgaaaatgtattagtt-gaaaggaagctcagtaagaacaatgg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32325402 |
tcaagtggaagcaagatagggtactcatctgaaaatgtattagttggaaaggaagctcagtaagaacaatgg |
32325473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University