View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3645_high_1 (Length: 544)
Name: NF3645_high_1
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 35096553 - 35096147
Alignment:
| Q |
18 |
tttcattagtaatcaatcacagtctttatagagctcttgacttactcatcacttttcattaaataatacaatttcttctttgttcttcattttttgagtt |
117 |
Q |
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| T |
35096553 |
tttcatcagtaatcaatcacagtctttatagagctcttgacttactaatcacttttcattaaataatacaatttcttctttgttcttcattttttgagtt |
35096454 |
T |
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| Q |
118 |
ctatatcactctctcataaaaataaattgtataggatggtttaaatctaataagcttcttacattagtattattatgttatctacaacgttaactgtgtg |
217 |
Q |
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| T |
35096453 |
ctatatcaccctctcataaaaataaattgtataggatggtttaaatctaataagcttcttacattagtattattatgttatctacaacgttaactgtgtg |
35096354 |
T |
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| Q |
218 |
ctttacatgaagaaaatcaagtaattagattagactagccatatatgttatgtatgatgattagttaattagtaatgcttggtattcaaaggctggccgt |
317 |
Q |
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| T |
35096353 |
ctttacatgaagaaaatcaagtaattagattagactaaccat-----------------attagttaattagtaatgcttggtattcaaaggctggccgt |
35096271 |
T |
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| Q |
318 |
gcatttctggtatgcgaaggaattttctttgataaacacaaaaattaaataaaattaaggacttggtcaattgattattaattaatctcactcactctat |
417 |
Q |
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| T |
35096270 |
gcatttctggtatgcgaaggaattttctttgataaacacaaaaattaaataaaattaaggacttggtcaattg---attaattaatctcactcactctat |
35096174 |
T |
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| Q |
418 |
ggatctctatttctatctgaattaatt |
444 |
Q |
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| T |
35096173 |
ggatctctatttctatctgaattaatt |
35096147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 492 - 540
Target Start/End: Complemental strand, 35096094 - 35096046
Alignment:
| Q |
492 |
ttactctattattagctttgtttctttctgctccttgcctttgcttctc |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
35096094 |
ttactctattattagctttgtttctttctgctccttgcgtttgtttctc |
35096046 |
T |
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