View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3645_high_11 (Length: 250)

Name: NF3645_high_11
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3645_high_11
NF3645_high_11
[»] chr6 (2 HSPs)
chr6 (1-240)||(3456279-3456514)
chr6 (1-44)||(30615003-30615046)
[»] chr8 (1 HSPs)
chr8 (1-36)||(22762006-22762041)
[»] chr1 (1 HSPs)
chr1 (1-44)||(43025880-43025923)
[»] chr7 (1 HSPs)
chr7 (1-39)||(38261000-38261038)
[»] chr3 (2 HSPs)
chr3 (1-35)||(28731850-28731884)
chr3 (1-33)||(10752333-10752365)
[»] chr5 (4 HSPs)
chr5 (1-42)||(19836178-19836219)
chr5 (1-41)||(1269610-1269650)
chr5 (1-41)||(17080462-17080502)
chr5 (1-41)||(32466566-32466606)
[»] chr2 (1 HSPs)
chr2 (1-49)||(31525043-31525091)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3456514 - 3456279
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatattttctttacttttctatgcaattgatataaagataaaa---tatcgacgccctaacaac 97  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||    
T  3456514 aattttgacattttgtcagttgaactagaacttctgaatattttctttacttttctatgcaactgatataaagataaaaaaatatcgacgccctaacaac 3456415  T
Q  98 cttgacgatcggtagaatgtagagttaaaatgatcacctaagtggaattgatcaagatgaaactgagctactattcacgcaactttgaaaaggatggttt 197  Q
    ||||||||| ||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3456414 cttgacgattggtaga-------gttaaaatgatcacctaaggggaattgatcaagatgaaactgagctactattcacgcaactttgaaaaggatgtttt 3456322  T
Q  198 ggctttcctatagagttatcccatacctaccatgcgtcctatg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3456321 ggctttcctatagagttatcccatacctaccatgcgtcctatg 3456279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 30615003 - 30615046
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatatttt 44  Q
    ||||||||||||||| || ||||||||| |||||||||||||||    
T  30615003 aatttcgacattttgccaattgaactaggacttctgaatatttt 30615046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22762041 - 22762006
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctg 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  22762041 aatttcggcattttgtcagttgaactagaacttctg 22762006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43025923 - 43025880
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatatttt 44  Q
    |||||||| ||||||||||||||||||| ||||||| |||||||    
T  43025923 aatttcgatattttgtcagttgaactaggacttctggatatttt 43025880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38261038 - 38261000
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaat 39  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  38261038 aatttcgacattttgtcagttgagctaggacttctgaat 38261000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28731884 - 28731850
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttct 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  28731884 aatttcgacattttgtcagttgagctagaacttct 28731850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10752365 - 10752333
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaactt 33  Q
    ||||| |||||||||||||||||||||||||||    
T  10752365 aattttgacattttgtcagttgaactagaactt 10752333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19836178 - 19836219
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatatt 42  Q
    ||||||||||||||| ||||||| |||| |||||||||||||    
T  19836178 aatttcgacattttgccagttgagctaggacttctgaatatt 19836219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1269610 - 1269650
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatat 41  Q
    ||||||||||||||||||||||| |||| ||||||| ||||    
T  1269610 aatttcgacattttgtcagttgagctaggacttctggatat 1269650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 17080502 - 17080462
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatat 41  Q
    ||||||||||||||||||||||| |||  ||||||||||||    
T  17080502 aatttcgacattttgtcagttgagctacgacttctgaatat 17080462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 32466606 - 32466566
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatat 41  Q
    |||||||||||||| ||||||||||||| ||||||| ||||    
T  32466606 aatttcgacattttatcagttgaactaggacttctggatat 32466566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31525043 - 31525091
Alignment:
Q  1 aatttcgacattttgtcagttgaactagaacttctgaatattttcttta 49  Q
    ||||||| ||||||||||||||| ||||||||| || ||||||| ||||    
T  31525043 aatttcggcattttgtcagttgagctagaacttgtggatattttattta 31525091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University