View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3645_high_12 (Length: 241)
Name: NF3645_high_12
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_high_12 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33272856 - 33272630
Alignment:
| Q |
1 |
tttgttgcaatgctataggaaaagcatgttgaagccatagaactttggagttatgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33272856 |
tttgttgcaatgctataggaaaagcatgttgaagccatagaactttggagttatgaagaagtggtcgttgaacacttggcaaaaatgagtaatcttagat |
33272757 |
T |
|
| Q |
101 |
tgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaagatatgttgagtggaatagatatcctttcaagtgtct |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
33272756 |
tgctcataatcaagtgcggtcggaatatcccaggtagtctatcgagcctttcaaatgcattaagatatgttgagtgggatggatatcctttcaagtgtct |
33272657 |
T |
|
| Q |
201 |
gccaacaagttttcaccccaatgacct |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
33272656 |
accaacaagttttcaccccaatgacct |
33272630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 33389045 - 33388879
Alignment:
| Q |
54 |
tgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttca |
153 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| | ||||||||||||| |
|
|
| T |
33389045 |
tgaagaggtggacgttgaacagttgtcaaaaatgagtaatcttagattactcatcatcaagtggggtccgaatatcccaagtagcccatcgagtctttca |
33388946 |
T |
|
| Q |
154 |
aatgcattaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcacccca |
220 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
33388945 |
aacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcacccca |
33388879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 33286536 - 33286379
Alignment:
| Q |
67 |
gttgaacacttggcaaaaatgagtaatcttagattgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaagat |
166 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||| | || || |||| |||||||||||| |||||||| |
|
|
| T |
33286536 |
gttgaacacttgtcaaaaatgagtaatcttagattgctcatcatcatgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagat |
33286437 |
T |
|
| Q |
167 |
atgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaatga |
224 |
Q |
| |
|
||||| |||||| | ||||||||||||| | | ||||| ||| ||||||||||||||| |
|
|
| T |
33286436 |
atgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatga |
33286379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 224
Target Start/End: Complemental strand, 33401673 - 33401454
Alignment:
| Q |
5 |
ttgcaatgctataggaaaagcatgttgaagccatagaactttgga---gttatgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagatt |
101 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| |||| || || |||||||||||| ||||||||||| |||||||||||||||||||| | |
|
|
| T |
33401673 |
ttgcaatgctttaggaaaagaatgttgaagccata---cttttgaaacgtaatgaagaggtggatgttgaacacttatcaaaaatgagtaatcttagact |
33401577 |
T |
|
| Q |
102 |
gctcatcatcaagtggggtcggaatatcccaggtagtct-atcgagtctttcaaatgcattaagatatgttgagtggaatagatatcctttcaagtgtct |
200 |
Q |
| |
|
|||||||||||||| | |||||||| |||| || || | ||||||||| | ||||||||||||||| ||| || |||||||||||||| | | |
|
|
| T |
33401576 |
tctcatcatcaagtgcaattggaatatctcagg-aggctcaaattttctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtattt |
33401478 |
T |
|
| Q |
201 |
gccaacaagttttcaccccaatga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
33401477 |
gccaacaagttttcaccccaatga |
33401454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 33263681 - 33263471
Alignment:
| Q |
11 |
tgctataggaaaagcatgttgaagccatagaactttggagttatgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcatcat |
110 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||| |||||| | |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33263681 |
tgctttaggaaaagcaagttaaagccatagt--tttgga-tgatgaagaggtggacgttgaacaattgtcaaaaatgagtaatcttagattgctcatcat |
33263585 |
T |
|
| Q |
111 |
caagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagt |
210 |
Q |
| |
|
|| || || | ||||| |||| || | | |||||||||| ||| ||||||||||||||| || |||||||| |||| | ||||| ||||| |
|
|
| T |
33263584 |
caggtacggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagt |
33263485 |
T |
|
| Q |
211 |
tttcaccccaatga |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33263484 |
tttcaccccaatga |
33263471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 9167752 - 9167600
Alignment:
| Q |
66 |
cgttgaacacttggcaaaaatgagtaatcttagattgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaaga |
165 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||| | ||| |||||||| | | || |||||||| || | ||||||| |
|
|
| T |
9167752 |
cgttgaacacttgtcaaaaatgagtagtcttagattgctcatcatcaaatacggttggaatatctta------ccatgtagtctttcgaacgaattaaga |
9167659 |
T |
|
| Q |
166 |
tatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaatga |
224 |
Q |
| |
|
||| |||||||| || ||||||||||||||| | ||||| | ||||||||| ||||||| |
|
|
| T |
9167658 |
tatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatga |
9167600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 33643701 - 33643856
Alignment:
| Q |
67 |
gttgaacacttggcaaaaatgagtaatcttagattgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaagat |
166 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| ||||| ||||| ||| || ||||| || || | | |||||||||| | |||||||| |
|
|
| T |
33643701 |
gttgaatacttgtcaaaaatgagtaatcttagattgctgatcataaagtgcggttggcatatcttagaaagcccaagttgtctttcaaaggaattaagat |
33643800 |
T |
|
| Q |
167 |
atgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaat |
222 |
Q |
| |
|
||||||| ||| ||| |||||||||| |||| ||||| ||| |||||| |||||| |
|
|
| T |
33643801 |
atgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaat |
33643856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 33305472 - 33305317
Alignment:
| Q |
69 |
tgaacacttggcaaaaatgagtaatcttagattgctcatcatcaagtggggtcggaatatcccaggtagtctatcgagtctttcaaatgcattaagatat |
168 |
Q |
| |
|
||||||| || ||||||||| |||||||||||| |||||| |||||| ||| || ||| |||| |||| || |||| ||||||| ||||| |||| |
|
|
| T |
33305472 |
tgaacacgtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatat |
33305373 |
T |
|
| Q |
169 |
gttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaatga |
224 |
Q |
| |
|
||||| ||| || ||||||||| |||| | ||||| ||| ||||||||||||||| |
|
|
| T |
33305372 |
gttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatga |
33305317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 33359762 - 33359654
Alignment:
| Q |
5 |
ttgcaatgctataggaaaagcatgttgaagccatagaactttggagttatgaagaggtggtcg---ttgaacacttggcaaaaatgagtaatcttagatt |
101 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||| ||| || | ||||| || |||| | ||||||||||| |||||||||||||||||||| | |
|
|
| T |
33359762 |
ttgcaatactttaggaaaaacatgttgaagccatag---ttttgattcatgaaaagatggtggactttgaacacttgtcaaaaatgagtaatcttagagt |
33359666 |
T |
|
| Q |
102 |
gctcatcatcaa |
113 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33359665 |
gctcatcatcaa |
33359654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 33410961 - 33410916
Alignment:
| Q |
66 |
cgttgaacacttggcaaaaatgagtaatcttagattgctcatcatc |
111 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33410961 |
cgttgaacacttttcaaaaatgagtaatcttagattgctcatcatc |
33410916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 33058571 - 33058513
Alignment:
| Q |
53 |
atgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagattgctcatcatc |
111 |
Q |
| |
|
||||||||| || | ||||||||||| |||||||||||||||| ||||||||| ||||| |
|
|
| T |
33058571 |
atgaagaggcggactttgaacacttgtcaaaaatgagtaatctcagattgctcttcatc |
33058513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 31561898 - 31561935
Alignment:
| Q |
75 |
cttggcaaaaatgagtaatcttagattgctcatcatca |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31561898 |
cttgtcaaaaatgagtaatcttagattgctcatcatca |
31561935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 31561997 - 31562062
Alignment:
| Q |
159 |
attaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaatga |
224 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| | ||||| |||||||||||||| |||| |
|
|
| T |
31561997 |
attaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatga |
31562062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 33058625 - 33058590
Alignment:
| Q |
5 |
ttgcaatgctataggaaaagcatgttgaagccatag |
40 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33058625 |
ttgcaatgctttaggaaaagcatgttgaagccatag |
33058590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 17439856 - 17439960
Alignment:
| Q |
7 |
gcaatgctataggaaaagcatgttgaagccatagaactttggagt-ta-tgaagaggtggtcgttgaacacttggcaaaaatgagtaatcttagattgct |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| | | || ||||||||||| || |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
17439856 |
gcaatgctttaggaaaagcatgttgaagccatagt--tttgaaatatactgaagaggtggacgctgaacatttgtcaaaaatgagtaatcttagattgct |
17439953 |
T |
|
| Q |
105 |
catcatc |
111 |
Q |
| |
|
||||||| |
|
|
| T |
17439954 |
catcatc |
17439960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 17440011 - 17440076
Alignment:
| Q |
159 |
attaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaatga |
224 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
17440011 |
attaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatga |
17440076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 31149257 - 31149203
Alignment:
| Q |
160 |
ttaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttc |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||| |
|
|
| T |
31149257 |
ttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttc |
31149203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 31033150 - 31033075
Alignment:
| Q |
147 |
tctttcaaatgcattaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccccaat |
222 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||| | ||||||||||| || | |||| |||||||||||||||||| |
|
|
| T |
31033150 |
tctttgaaatgaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaat |
31033075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 31018687 - 31018642
Alignment:
| Q |
148 |
ctttcaaatgcattaagatatgttgagtggaatagatatcctttca |
193 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
31018687 |
ctttcaaatgaattgagatatgttgaatggaacagatatcctttca |
31018642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 1527 - 1468
Alignment:
| Q |
159 |
attaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccc |
218 |
Q |
| |
|
|||| |||||||| | |||| | ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
1527 |
attacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccc |
1468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 7273 - 7214
Alignment:
| Q |
159 |
attaagatatgttgagtggaatagatatcctttcaagtgtctgccaacaagttttcaccc |
218 |
Q |
| |
|
|||| |||||||| | |||| | ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7273 |
attacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccc |
7214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University