View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3645_high_3 (Length: 360)
Name: NF3645_high_3
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_high_3 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 4182285 - 4182222
Alignment:
| Q |
250 |
caaatgattggctggtacaaaaatattaacattcttatattatggttgtattttcataatacat |
313 |
Q |
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| T |
4182285 |
caaatgattggctggtacaaaaatattaacattcttatattatggttatattttcataatacat |
4182222 |
T |
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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 4743129 - 4743066
Alignment:
| Q |
250 |
caaatgattggctggtacaaaaatattaacattcttatattatggttgtattttcataatacat |
313 |
Q |
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| T |
4743129 |
caaatgattggctggtacaaaaatattaacattcttatattatggttatattttcataatacat |
4743066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 4182462 - 4182401
Alignment:
| Q |
129 |
atccctttctggtagttgcttggtaatggttcgtaccttgcagtttcaccagttgtctcatt |
190 |
Q |
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| T |
4182462 |
atccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttgtctcatt |
4182401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 4743306 - 4743245
Alignment:
| Q |
129 |
atccctttctggtagttgcttggtaatggttcgtaccttgcagtttcaccagttgtctcatt |
190 |
Q |
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| T |
4743306 |
atccctttctggtagttgcttggtaatggtttgtatcttgcagttttaacagttgtctcatt |
4743245 |
T |
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Target: scaffold0710 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 2972 - 3061
Alignment:
| Q |
37 |
attgacctcaaacaagcttaatttaatatcatatagagat--agaatatttaaaggttgacgtga-gaaaaattaagtccttgcagttat |
123 |
Q |
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| T |
2972 |
attgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaattaagaccttgcagttat |
3061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 51855577 - 51855666
Alignment:
| Q |
37 |
attgacctcaaacaagcttaatttaatatcatatagagat--agaatatttaaaggttgacgtga-gaaaaattaagtccttgcagttat |
123 |
Q |
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| T |
51855577 |
attgacttcaaacaagcttaattcaatatcagatagatatgaaaaatatttgaaggtggacgtgacaaaaaattaagaccttgcagttat |
51855666 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 13951770 - 13951694
Alignment:
| Q |
44 |
tcaaacaagcttaatttaatatcatatagagatagaatatttaaaggttgacgtgagaaaaattaagtccttgcagtt |
121 |
Q |
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| T |
13951770 |
tcaaacaagctaaattcaatatcaaatagagatggaatatttaaaggtagatgtga-caaagtttagtccttgcagtt |
13951694 |
T |
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