View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3645_high_4 (Length: 349)
Name: NF3645_high_4
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 74 - 333
Target Start/End: Complemental strand, 19042706 - 19042446
Alignment:
| Q |
74 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
173 |
Q |
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| T |
19042706 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
19042607 |
T |
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| Q |
174 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
273 |
Q |
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| T |
19042606 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
19042508 |
T |
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| Q |
274 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcattt |
333 |
Q |
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| T |
19042507 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcattt |
19042446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 74 - 333
Target Start/End: Original strand, 20711930 - 20712190
Alignment:
| Q |
74 |
ggtgtaatttcttgtttacttcagaccttcaacattgctctggatatgtattgaaaagatgctgtaaaaccaggccccacctaattacttgctgatgcct |
173 |
Q |
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| T |
20711930 |
ggtgttatttcttgtttatttcaaacctccaacattgctctggatatgtattgaaaagatgctgtaactccagaccccacgtaattacttgctgatgcct |
20712029 |
T |
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| Q |
174 |
ttttaatttatttcccttgtatgatcctctaaaatgtccatttgttaactcagattctaataaacatggattcgatattagcagtggttgaatttgaaaa |
273 |
Q |
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| T |
20712030 |
ttttaattaatttccattgtatgatcctct-aaatgcccatttgttaacttagattctaataaatatggattgagtgttagaagtggttgaacttgaaaa |
20712128 |
T |
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| Q |
274 |
caatgagcttaatatta--atatctctctaaattttatattttaatgtatcttatttcattt |
333 |
Q |
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| T |
20712129 |
caatgaacttaatcttaatatatctctctaaattttatatcttaatgtatcctatttcattt |
20712190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 19042818 - 19042751
Alignment:
| Q |
3 |
atgtattcaatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
70 |
Q |
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| T |
19042818 |
atgtattcaatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
19042751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20711818 - 20711885
Alignment:
| Q |
3 |
atgtattcaatattcatatctccgattggtttgtacaatatcttgtttggcattgatgtaaccatgtt |
70 |
Q |
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| T |
20711818 |
atgtattcaatattcatatctccgattggtttgtacaatttcttgtttgacattgatgtaaccatgtt |
20711885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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