View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3645_low_11 (Length: 268)
Name: NF3645_low_11
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_low_11 |
 | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0290 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 8092 - 7843
Alignment:
| Q |
1 |
aatctaatgagtgtaagtgttttcacgttgacaaagaagaaacataagaaaaaatagtgaaattatttccaaagatctaattaaaattatatagatttta |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8092 |
aatctagtgagtgtaagtgttttcacgttgacaaagaagaaacataagaaaaaatagtgaaattatttccaaagatctaattaaaattatatagatttta |
7993 |
T |
|
| Q |
101 |
ctaatatgactttttagtacatcataatatgactttttagttaacttgttttgtagtcattgtcgcatcatcaaacacagtatctccaattgcaaatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7992 |
ctaatatgactttttagtacatcataatatgactttttagttaacttgttttgtaggcattgtcgcatcatcaaacacagtatctccaattgcaaatgga |
7893 |
T |
|
| Q |
201 |
tacatctggagaaggagcatggtaatcttgggaaaaaccaatgatagagg |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7892 |
tacatctggagaaggagcatggtaatcttgggaaaaaccaatgatagagg |
7843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 18982937 - 18982819
Alignment:
| Q |
132 |
actttttagttaacttgttttgtagtcattgtcgcatcatcaaacacagtatctccaattgcaaatggatacatctggagaaggagcatggtaatcttgg |
231 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18982937 |
actttttagttaacttgttttgtaggcattgtcgcatcatcaaacacagtatctccaatcgcaaatggatacatctggagaaggagcatggtaatcttgg |
18982838 |
T |
|
| Q |
232 |
gaaaaaccaatgatagagg |
250 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18982837 |
gaaaaaccaatgatagagg |
18982819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 18983091 - 18982999
Alignment:
| Q |
1 |
aatctaatgagtgtaagtgttttcacgttgacaaagaagaaacataagaaaaaatagtgaaattatttccaaagatctaattaaaattatata |
93 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18983091 |
aatctaatgagtgtaactgttttcacgttgacaaagaagaaccataagaaaaaatagtgaaattatttccaaagatctaattaaaattatata |
18982999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 9453711 - 9453809
Alignment:
| Q |
146 |
ttgttttgtagtcattgtcgcatcatcaaacacagtatctccaattgcaaatggatacatctggagaaggagcatggtaat-cttgggaaaaaccaatg |
243 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||| | | | || |||||||||||||||||| ||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
9453711 |
ttgttttgcagtcattgttgcatcatcgaacataatctttctaattgcaaatggatacattctgagaaagagcatggtaatccttggaaaaaaccaatg |
9453809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University