View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3645_low_12 (Length: 263)

Name: NF3645_low_12
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3645_low_12
NF3645_low_12
[»] chr6 (12 HSPs)
chr6 (17-254)||(33272989-33273226)
chr6 (17-249)||(33411149-33411382)
chr6 (17-249)||(9167968-9168200)
chr6 (17-249)||(33058760-33058992)
chr6 (17-249)||(31561460-31561692)
chr6 (17-245)||(33305683-33305911)
chr6 (20-197)||(33263849-33264026)
chr6 (17-252)||(33286739-33286974)
chr6 (17-199)||(33401811-33401993)
chr6 (17-249)||(33389266-33389501)
chr6 (17-250)||(33643252-33643488)
chr6 (115-192)||(28869479-28869556)
[»] chr2 (1 HSPs)
chr2 (17-254)||(17439474-17439711)
[»] scaffold0428 (1 HSPs)
scaffold0428 (17-249)||(7957-8189)
[»] chr4 (13 HSPs)
chr4 (20-249)||(31477622-31477854)
chr4 (115-251)||(31502743-31502879)
chr4 (17-94)||(31502921-31502998)
chr4 (115-249)||(31149637-31149771)
chr4 (21-177)||(31527601-31527760)
chr4 (115-249)||(31028970-31029104)
chr4 (17-195)||(31497629-31497803)
chr4 (17-85)||(31149536-31149604)
chr4 (115-249)||(31158538-31158672)
chr4 (115-249)||(31019089-31019223)
chr4 (116-193)||(31483535-31483612)
chr4 (42-83)||(31483648-31483689)
chr4 (213-249)||(31490323-31490359)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 33272989 - 33273226
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33272989 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaagaatgcattataattgttgactcaccaaggc 33273088  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33273089 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 33273188  T
Q  217 aaaacaagcaatatgaagaaatatttctttttcagtat 254  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33273189 aaaacaagcaatatgaagaaatatttctttttcagtat 33273226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 33411149 - 33411382
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||  |||  ||  ||| ||    
T  33411149 ctgctccactttctttgctctttgcttgaattttcttgcacaatttttctgcctagctcttccaacaaagaatgcattttaatatttgcatcctcaatgc 33411248  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactg-tagctga 215  Q
    ||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||  |  |||  || |||    
T  33411249 ttataagtgatttatcaatgagaactcctaatccaatatcagcatgaaatccacaacaatttagaacgtttttaacatatttctcggggctgagagttga 33411348  T
Q  216 aaaaacaagcaatatgaagaaatatttctttttc 249  Q
    ||||||||||||||| ||||||||||||||||||    
T  33411349 aaaaacaagcaatatcaagaaatatttctttttc 33411382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 9167968 - 9168200
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||   ||| | |  || ||    
T  9167968 ctgctccattttctttgctctttgcttgaattttcttgcacaatttttctgcccagctcttctaacaaataatgcattttaatctctgaataattaatgc 9168067  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 216  Q
    ||||||||||||||||| ||||||| ||||||||||| ||| ||| ||| |||||||||||||||||||| |||||||| | ||  || |   || ||||    
T  9168068 ttataagtgatttatcaatgagaactcttaatccaatatcaacataaaatccacaacaatttagaatgttgttaacatagttctcggaccaagagttgaa 9168167  T
Q  217 aaaacaagcaatatgaagaaatatttctttttc 249  Q
    ||||||||||||||||||||||||||| |||||    
T  9168168 aaaacaagcaatatgaagaaatatttccttttc 9168200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 33058760 - 33058992
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    |||||||| |||||| | |||||||||||| | | |||||||||||||||||| ||||||||||||||| |||||||  ||||  |||| | || || ||    
T  33058760 ctgctccattttcttggttctttgcttgaactattttgcacaatttttctgcctagctcttccaacaaagaatgcatgttaataattgaataactaatgc 33058859  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 216  Q
    ||| ||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||| ||||| ||||  || | ||||    
T  33058860 ttacaagtgatttatcaatgagaactcttaatccaatatcagcatgaaatccacaacagtttagaatgtttttaacatcttcctccgaatcgttgttgaa 33058959  T
Q  217 aaaacaagcaatatgaagaaatatttctttttc 249  Q
    |||||||||||||||||||||||| ||||||||    
T  33058960 aaaacaagcaatatgaagaaatatgtctttttc 33058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 31561692 - 31561460
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||| | | ||| ||    
T  31561692 ctgctccactttctttgctctttgcttgaactttcttgcacaatttttctgcctagttcttccaacaaataatgcattttaattattgaattatcaatgc 31561593  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactg-tagctga 215  Q
    |||||||||||||||||  |||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||| | ||   |||  | |  || |||    
T  31561592 ttataagtgatttatcaaggagaactcttaatccaatatcagcatgaaatccacaactatttagaatgtttttaac-tcttttctcgtgcagaaagttga 31561494  T
Q  216 aaaaacaagcaatatgaagaaatatttctttttc 249  Q
    |||||||||||||||||||||| |||||||||||    
T  31561493 aaaaacaagcaatatgaagaaacatttctttttc 31561460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 33305683 - 33305911
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||  |||   ||| | |  |  |     
T  33305683 ctgctccactttctttgctctttgcttgaattttcttgcacaatttttctgcctagctcttccaacaaagaatgtatttcaatatgtgaataattagtgt 33305782  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 216  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| | |||| | |  |   || ||||    
T  33305783 ttataagtgatttatcattgagaactcttaatccaatatcagcatggaatccacaacaatttagaatgtttttaacctcttccatgggccaagagttgaa 33305882  T
Q  217 aaaacaagcaatatgaagaaatatttctt 245  Q
     ||||||||||||| ||||||||||||||    
T  33305883 gaaacaagcaatatcaagaaatatttctt 33305911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 33263849 - 33264026
Alignment:
Q  20 ctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggctta 119  Q
    ||||| |||||| ||||||||| |||| | | |||||||||||||| ||| ||||||| ||||||| |||||||||||||| |||| | || || |||||    
T  33263849 ctccattttcttggctctttgcatgaactattttgcacaatttttcggcctagctcttgcaacaaagaatgcattataattcttgaattactaatgctta 33263948  T
Q  120 taagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatatt 197  Q
    ||||||||||| || ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  33263949 taagtgatttagcaatgagaacacttaatccaatatcagcatgaaatccacaacaatttaaaatgtttttaacatatt 33264026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 33286739 - 33286974
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataat-tgttgactcaccaagg 115  Q
    |||||||| |||||| |||||||||||||| | | |||||||||||||||||| ||||||||||||||| ||||||||  ||  | ||||| ||  || |    
T  33286739 ctgctccattttcttggctctttgcttgaactattttgcacaatttttctgcctagctcttccaacaaagaatgcatttcaagattttgac-cattaatg 33286837  T
Q  116 cttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctga 215  Q
     | ||||||||||||||| | ||||| ||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||  | |||  ||  | |||    
T  33286838 ttcataagtgatttatcaataagaactcttaatccaatatcagcatgaaatctacaacaatttagaatgtttttagcatatttttccgatttgcggttga 33286937  T
Q  216 aaaaacaagcaatatgaagaaatatttctttttcagt 252  Q
    ||||||||||||||| |||||||||||||||||||||    
T  33286938 aaaaacaagcaatatcaagaaatatttctttttcagt 33286974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 33401811 - 33401993
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataat-tgttgactcaccaagg 115  Q
    |||||||| |||||| |||||||||||||| ||| |||||||||||||||||| ||||||| ||||||| ||||||||  ||| | ||||| ||  || |    
T  33401811 ctgctccattttcttggctctttgcttgaagttttttgcacaatttttctgcctagctctttcaacaaagaatgcatttcaatattttgac-cattaatg 33401909  T
Q  116 cttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattcc 199  Q
    |||||||||||||||||| ||||||| |||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  33401910 cttataagtgatttatcaatgagaactcttattccaatatcagcattaaatccacaacaatttagaatgtttttaacatattcc 33401993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 33389266 - 33389501
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcacca---a 113  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||  |||| ||| ||||||||  |||   ||| |||| |   |    
T  33389266 ctgctccactttctttgctctttgcttgaattttctcgcacaatttttctgcctagctcaaccaataaagaatgcatttcaatcactgaatcactattaa 33389365  T
Q  114 ggcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagct 213  Q
     ||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||  |||||||| |||||| ||||||| ||  ||   |  | |    
T  33389366 tgcttataagtgatttatcaatgagaactcttaatccaatatcagcatgaaatccacaatgatttagaacgttttttacatatttctctgattcgcggtt 33389465  T
Q  214 gaaaaaacaagcaatatgaagaaatatttctttttc 249  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33389466 gaaaaaacaagcaatatcaagaaatatttctttttc 33389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 33643488 - 33643252
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgt---tgactcaccaa 113  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| | || |||||||| |||| | ||||||||  |||  |   ||| | | |||    
T  33643488 ctgctccactttctttgctctttgcttgaattttcttgcacaattttttttcctagctcttctaacagagaatgcatttcaatcctcattgaataatcaa 33643389  T
Q  114 ggcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcg----aactgt 209  Q
     ||||||||||||||||||| ||||||| ||||| ||||| ||||||||||| ||||||||||||| |||||||||| |||||| | |||    ||| ||    
T  33643388 tgcttataagtgatttatcaatgagaactcttaacccaatatcagcatgaaatccacaacaatttaaaatgtttttagcatatttc-tcgtgataaccgt 33643290  T
Q  210 agctgaaaaaacaagcaatatgaagaaatatttctttttca 250  Q
       |||||||||||||||||| |||||||||||||||||||    
T  33643289 ---tgaaaaaacaagcaatatcaagaaatatttctttttca 33643252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 28869556 - 28869479
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaac 192  Q
    ||||||||| ||||||||| |||||||  |||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  28869556 gcttataagggatttatcaatgagaacttttaatccaatatcagcatgaaacccacaacaatttagaatgtttttaac 28869479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 17439711 - 17439474
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataat-tgttgactcaccaagg 115  Q
    |||||||| |||||| | || ||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||  ||| | ||||| ||  || |    
T  17439711 ctgctccattttcttgggtcattgcttgaactattttgcacaatttttctgcccagctcttccaacaaagaatgcatttcaatgttttgac-cattaatg 17439613  T
Q  116 cttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctga 215  Q
    |||||||||||||||| | ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||   |     || |||    
T  17439612 cttataagtgatttattaatgagaactcttaatccaatatcagcatgaaatccacaacaattaagaatgtttttaacatatttctcacattcagagttga 17439513  T
Q  216 aaaaacaagcaatatgaagaaatatttctttttcagtat 254  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  17439512 aaaaacaagcaatatcaagaaatatttccttttcagtat 17439474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 7957 - 8189
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||  ||   ||||  ||  || |     
T  7957 ctgctccactttctttgctctttgcttgaattttcttgcacaatttttctgcctaactcttccaacaaagaatgcatttcaacaattgaaccatgaatgg 8056  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctgaa 216  Q
    |||| |||||||||||| |||||||  | |||||||| ||||| ||||| ||||||||||||||||||||||||| |  || ||     |   || ||||    
T  8057 ttattagtgatttatcaatgagaactataaatccaatatcagcgtgaaatccacaacaatttagaatgtttttaataattttctcattccgagagttgaa 8156  T
Q  217 aaaacaagcaatatgaagaaatatttctttttc 249  Q
    |||||||||||||| ||||||||||||||||||    
T  8157 aaaacaagcaatatcaagaaatatttctttttc 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 31477854 - 31477622
Alignment:
Q  20 ctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactc---accaaggc 116  Q
    ||||| |||||| |||||||||||||||||||||| ||||||| ||| || |||||||||||||||  ||||||   |||   |   ||   | ||| ||    
T  31477854 ctccagtttctttgctctttgcttgaattttcttgaacaatttctctccctagctcttccaacaaaccatgcatgtgaataaatccatctgcatcaatgc 31477755  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacata-ttccttcgaactgtagctga 215  Q
    ||||||||||||||||| ||||||| ||||||||||| || |||||||| ||||||||||||| ||  ||||||| ||| ||||  | |||| |   |||    
T  31477754 ttataagtgatttatcaatgagaactcttaatccaatatcggcatgaaatccacaacaatttaaaacatttttaagatatttcccccaaact-tgattga 31477656  T
Q  216 aaaaacaagcaatatgaagaaatatttctttttc 249  Q
    ||||||||||||||||||||||||||||||||||    
T  31477655 aaaaacaagcaatatgaagaaatatttctttttc 31477622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 31502879 - 31502743
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctg 214  Q
    ||||||||||||||||||| ||||||| |||||||| || ||||||||||| ||||||||||||||||  ||||||||||||| || |   ||     ||    
T  31502879 gcttataagtgatttatcaatgagaactcttaatcctatatcagcatgaaatccacaacaatttagaacatttttaacatatttctccatgctcggattg 31502780  T
Q  215 aaaaaacaagcaatatgaagaaatatttctttttcag 251  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31502779 aaaaaacaagcaatatgaagaaatatttccttttcag 31502743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 31502998 - 31502921
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcatt 94  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||||||  |||||||    
T  31502998 ctgctccactttcttggctctttgcttgaattttcttgaacaatttttcttcctagctcttccaacaaaccatgcatt 31502921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 31149637 - 31149771
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctg 214  Q
    ||||||||  ||||||||| | ||||| ||||||||||| ||||||||||| |||||||| |||||||  ||||||||||||| || |  ||      ||    
T  31149637 gcttataacggatttatcaattagaacccttaatccaatatcagcatgaaatccacaacagtttagaacatttttaacatatttctcctcaccccctttg 31149736  T
Q  215 aaaaaacaagcaatatgaagaaatatttctttttc 249  Q
    ||||||||||||||||| ||||||||||| |||||    
T  31149737 aaaaaacaagcaatatggagaaatatttccttttc 31149771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 31527601 - 31527760
Alignment:
Q  21 tccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataat-----tgttgactcaccaagg 115  Q
    |||||||||||   |||||||||||||||||||| ||||||||| ||||||||||||| ||||||  |||||||  |||     | ||  || |   | |    
T  31527601 tccactttcttgaatctttgcttgaattttcttgaacaatttttttgcccagctcttctaacaaaccatgcatttcaatcttacttttttctgat--atg 31527698  T
Q  116 cttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatt 177  Q
    |||||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||    
T  31527699 cttataagtgatttgtcaatgagaactcttaatccaatatcagcatgaaatccacaacaatt 31527760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 31028970 - 31029104
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagc-- 212  Q
    ||||||||| ||||||||| ||||||  |||||||| || ||||||||||| |||| |||||||||||| ||| ||||| |||||||     |||| |      
T  31028970 gcttataagggatttatcaatgagaattcttaatccgatatcagcatgaaacccacgacaatttagaatatttgtaacacattcctt---gttgtaccct 31029066  T
Q  213 -tgaaaaaacaagcaatatgaagaaatatttctttttc 249  Q
     |||||||||||||||||| ||||||||| ||||||||    
T  31029067 ttgaaaaaacaagcaatatcaagaaatatatctttttc 31029104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 31497803 - 31497629
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaataatgcattataattgttgactcaccaaggc 116  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||| |||||||| || |||| ||||| || |||||||  |||   |   ||  ||| ||    
T  31497803 ctgctccactttcttctctccttgcttgaattttcttgaacaatatttctgcctagttcttgcaacatatcatgcatttgaatctct---tcctcaatgc 31497707  T
Q  117 ttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacata 195  Q
    | | ||||||||||||| ||||||| |||||||| || | | ||||||| ||||||| ||||||||  |||||||||||    
T  31497706 tcacaagtgatttatcaatgagaactcttaatccgatatgaacatgaaatccacaac-atttagaacatttttaacata 31497629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 31149536 - 31149604
Alignment:
Q  17 ctgctccactttcttcgctctttgcttgaattttcttgcacaatttttctgcccagctcttccaacaaa 85  Q
    |||||||||||||||  ||||||| |||| |||||||| |||||||||||||| ||||||| |||||||    
T  31149536 ctgctccactttcttgactctttgattgatttttcttgaacaatttttctgccaagctcttgcaacaaa 31149604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 31158538 - 31158672
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagctg 214  Q
    ||||| ||||||||||||| | ||||| ||||||||||| |||||||| || ||||| ||||||||||  ||||  |||||   ||||   || |   ||    
T  31158538 gcttagaagtgatttatcaattagaactcttaatccaatatcagcatggaatccacagcaatttagaactttttggacataaatcttcttgctctgaatg 31158637  T
Q  215 aaaaaacaagcaatatgaagaaatatttctttttc 249  Q
    |||||||||||||| | ||||||||||||||||||    
T  31158638 aaaaaacaagcaatgtcaagaaatatttctttttc 31158672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 31019089 - 31019223
Alignment:
Q  115 gcttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaacatattccttcgaactgtagct- 213  Q
    ||||||||| ||||||||| | ||||  |||||||| || || | |||||| ||||||||||||||||| ||| ||| | |||||||   |  ||| ||     
T  31019089 gcttataagggatttatcaataagaattcttaatccgatatctggatgaaatccacaacaatttagaatatttgtaagacattcctt---atcgtacctt 31019185  T
Q  214 --gaaaaaacaagcaatatgaagaaatatttctttttc 249  Q
      ||||||||||||||||| ||||||||||||||||||    
T  31019186 tcgaaaaaacaagcaatatcaagaaatatttctttttc 31019223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 31483612 - 31483535
Alignment:
Q  116 cttataagtgatttatcattgagaacacttaatccaatgtcagcatgaaaaccacaacaatttagaatgtttttaaca 193  Q
    ||||||||||||||||||   ||||| ||||||||||| |||| |||||| ||||||||||||| ||  |||||||||    
T  31483612 cttataagtgatttatcaacaagaactcttaatccaatatcaggatgaaatccacaacaatttaaaacatttttaaca 31483535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 31483689 - 31483648
Alignment:
Q  42 ttgaattttcttgcacaatttttctgcccagctcttccaaca 83  Q
    ||||||||||||| |||||| |||||||||||||||| ||||    
T  31483689 ttgaattttcttgaacaattcttctgcccagctcttcaaaca 31483648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 31490359 - 31490323
Alignment:
Q  213 tgaaaaaacaagcaatatgaagaaatatttctttttc 249  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  31490359 tgaagaaacatgcaatatgaagaaatatttctttttc 31490323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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