View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3645_low_16 (Length: 236)
Name: NF3645_low_16
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 47523960 - 47524164
Alignment:
| Q |
15 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaagga |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47523960 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgaggaacagttgacacgcttaggagttggaagcttggttttgcattcctccgagga |
47524059 |
T |
|
| Q |
115 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacact |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47524060 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaagacaagtgtcaatttgttgataaaactttcttagaatttcagaacact |
47524159 |
T |
|
| Q |
215 |
atcat |
219 |
Q |
| |
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||||| |
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|
| T |
47524160 |
atcat |
47524164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 47529329 - 47529536
Alignment:
| Q |
12 |
aagaatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaa |
111 |
Q |
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||||| ||||| |||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||||||| | |||| ||||||||||||| ||| | |
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| T |
47529329 |
aagaacatcgaggacaaggaatgtgtcgtttgttgatggatgaacttgagaaacaattgactcgcttaggagtagaaagcatggttttgcattcatccga |
47529428 |
T |
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| Q |
112 |
ggatgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaac |
211 |
Q |
| |
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||||||||||||||| ||||||||| | |||||||||| ||||| || || || ||||| ||||||||||||||| ||||||||||||||||||| || |
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| T |
47529429 |
ggatgctatagacacatggacaaaatcttttggttttgagaggatgacaggtaaagacaagcgtcaatttgttgatattactttcttagaatttcaggac |
47529528 |
T |
|
| Q |
212 |
actatcat |
219 |
Q |
| |
|
||| |||| |
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|
| T |
47529529 |
actgtcat |
47529536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 47551009 - 47551213
Alignment:
| Q |
15 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaagga |
114 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| | | ||||||| |||| |||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
47551009 |
aatatcgaagacaaggaatgtgttgtttgttgatgaaggggcttgaggaacaattgattaacttaggagttgggagcttggttttgcattcctccaagga |
47551108 |
T |
|
| Q |
115 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacact |
214 |
Q |
| |
|
|||||||||||| |||| |||| | ||| ||||| | ||| || ||| |||||||| |||||||| || |||||||||| ||||||||| ||||| |
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| T |
47551109 |
tgctatagacacttggaaaaaatcatttcattttgttgagatgacgaatgaagacaagtgtaaatttgttcattatactttctttgaatttcaggacact |
47551208 |
T |
|
| Q |
215 |
atcat |
219 |
Q |
| |
|
||||| |
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|
| T |
47551209 |
atcat |
47551213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 44870463 - 44870262
Alignment:
| Q |
18 |
atcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaaggatgc |
117 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| | ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| || | ||||| |
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| T |
44870463 |
atcgaggacgaggaatgtgtcgtttgttgatggatgagcttgaggaacagttgactcgcttaggagtaggaagattggttttgcattcatctgaagatgc |
44870364 |
T |
|
| Q |
118 |
tatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaacactatc |
217 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||||||| || | ||| |||||||| || || ||||||||||||||||||||||||| ||| ||||| |
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| T |
44870363 |
tataaacacttggacaaaatcgtttggttttgctaggatgacgagtgaagacaagtgtaaacttattgataatactttcttagaatttcacaactctatc |
44870264 |
T |
|
| Q |
218 |
at |
219 |
Q |
| |
|
|| |
|
|
| T |
44870263 |
at |
44870262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 9819619 - 9819424
Alignment:
| Q |
15 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaagga |
114 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| | ||| ||||||||||||| || ||||||||||||| | || || |||||||||| |||| |
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| T |
9819619 |
aatatcgacgacaaggaatgtgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagagga |
9819520 |
T |
|
| Q |
115 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaa |
210 |
Q |
| |
|
|||||| |||| ||||||| | | ||||||||||| ||||| || | || | |||||||| ||| ||||| ||||||| |||||||||||||| |
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|
| T |
9819519 |
tgctatgaacacttggacaagatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaa |
9819424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 9854361 - 9854556
Alignment:
| Q |
15 |
aatatcgaagacaaggaatgtgtcgtttgttgatgcacgagcttgagaaacagttgacacgcttaggagttggaagcttggttttgcattcctccaagga |
114 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||| | ||| ||||||||||||| || ||||||||||||| | || || |||||||||| |||| |
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| T |
9854361 |
aatatcgacgacaaggaatctgtcatttgttgatggatgagattgagaaacagttaactcgcttaggagttgagaaattacttctgcattcctcagagga |
9854460 |
T |
|
| Q |
115 |
tgctatagacacgtggacaaaagcgtttggttttgctaggataaccggagaaaacaagtgtcaatttgttgataatactttcttagaatttcagaa |
210 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||||||| ||||| || | || | |||||||| ||| ||||| ||||||| |||||||||||||| |
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| T |
9854461 |
tgctatgaacatttggacaaaatcatttggttttgccaggatggccagtaaagataagtgtcagtttattgatcatacttttttagaatttcagaa |
9854556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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