View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3645_low_3 (Length: 417)
Name: NF3645_low_3
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3645_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 37783348 - 37782945
Alignment:
| Q |
1 |
agagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatcca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783348 |
agagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatcca |
37783249 |
T |
|
| Q |
101 |
gaggctacaattccctgcagtaacattcacttgcatttaacaactacattcgaacctttaatttaacacat-----atatatatgaagggagtaaaattc |
195 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
37783248 |
gaggctacaattccctgcaataacattcacttgcatttaacaactacattcgaacctttaatataacacatatatgatatatatgaagggagtaaaattc |
37783149 |
T |
|
| Q |
196 |
ttgtaaattccactaaatttacttgtgtcccagtctaaagtaga-nnnnnnnngtctctatgttgtaaataattagaaaatgcattgtccaatatatatt |
294 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
37783148 |
ttgtaaattccactaaatttacgtgtgtcccagtctaaagtagatttttttttgtctctatgttgtaaaaaattagaaaaagcattgtccaatatatatt |
37783049 |
T |
|
| Q |
295 |
tctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaagtggtttgattgattgagtttctacgagcataccgaataagcaatag |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783048 |
tctcaaatttttgttcatatttgaatctacctatctcaaataaaaaacttgaattggtttgattgattgagtttctacgagcataccgaataagcaatag |
37782949 |
T |
|
| Q |
395 |
taag |
398 |
Q |
| |
|
|||| |
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|
| T |
37782948 |
taag |
37782945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 37808582 - 37808448
Alignment:
| Q |
11 |
acaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
110 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||||| |||||| |||||| |||| |||||||||||||||| || |||| | |||||| | |||| |
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| T |
37808582 |
acaagtaaaagctgaagaggattgaaaacagacacaaatagaggacccctcatccttatacaccaagaaataacaataaccactgacccagagaccacaa |
37808483 |
T |
|
| Q |
111 |
ttccctgcagtaacattcacttgcatttaacaact |
145 |
Q |
| |
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| ||||||| |||||||||| | |||||||||||| |
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|
| T |
37808482 |
taccctgcattaacattcacatacatttaacaact |
37808448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 37792503 - 37792398
Alignment:
| Q |
11 |
acaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
110 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||| | |||||||| | | || |||||||||||||| |
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| T |
37792503 |
acaagtaggagttgaagaggatagaaaacagaggcaaaaagagggcctctcatctttatgcaccaggcaataacaatagtagttattccagaggctacaa |
37792404 |
T |
|
| Q |
111 |
ttccct |
116 |
Q |
| |
|
|||||| |
|
|
| T |
37792403 |
ttccct |
37792398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37803883 - 37803798
Alignment:
| Q |
1 |
agagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaa |
86 |
Q |
| |
|
||||| ||| |||||||| || |||||||||| |||| |||| | ||| | ||| |||||||||||||||||||||| |||||||| |
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| T |
37803883 |
agagacagccacaagtaaaagttgaagaggatagaaaacagaggcaaagagagggcctctcatctttatgcaccaagcaataacaa |
37803798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 1213982 - 1214066
Alignment:
| Q |
26 |
agaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
110 |
Q |
| |
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||||| ||||| |||||| ||||| ||| || ||||||||||||||||| ||| | |||| || ||||||||||||||| |||| |
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| T |
1213982 |
agagggttgaagacagatgcaaataaaggtcccctcatctttatgcaccacgaagtcacaataaccactaatccagaggcaacaa |
1214066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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