View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3645_low_7 (Length: 306)

Name: NF3645_low_7
Description: NF3645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3645_low_7
NF3645_low_7
[»] chr4 (2 HSPs)
chr4 (64-211)||(45909605-45909755)
chr4 (63-173)||(45916163-45916273)
[»] chr5 (3 HSPs)
chr5 (11-64)||(34607204-34607257)
chr5 (11-61)||(34632299-34632349)
chr5 (11-53)||(34607266-34607308)
[»] chr3 (3 HSPs)
chr3 (11-64)||(23435101-23435154)
chr3 (11-65)||(26712989-26713043)
chr3 (11-64)||(26708738-26708791)
[»] chr1 (4 HSPs)
chr1 (11-64)||(9791411-9791464)
chr1 (11-64)||(9795750-9795803)
chr1 (11-64)||(45994872-45994925)
chr1 (11-64)||(45999125-45999178)
[»] chr8 (2 HSPs)
chr8 (17-64)||(26763489-26763536)
chr8 (17-64)||(26767741-26767788)
[»] chr7 (2 HSPs)
chr7 (17-64)||(35926666-35926713)
chr7 (17-64)||(35930915-35930962)
[»] chr6 (1 HSPs)
chr6 (17-64)||(27695216-27695263)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 64 - 211
Target Start/End: Complemental strand, 45909755 - 45909605
Alignment:
Q  64 atgatatcagtgggagaatgcacggagtcagcttccggatcatgttagaattgtcgagatcagcgccaatgactcttggttc---cgtgacatgggaccc 160  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  45909755 atgatatcagtgggagaatgcaccgagtcagcttccggatcatgttagaattgtcgagatcagcgccaatgattcttggttccgtcgtgacatgggaccc 45909656  T
Q  161 accgtgagttttttctggtcaatattttggatttataattcattgtagact 211  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45909655 accgtgagttttttctggtcaatagtttggatttataattcattgtagact 45909605  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 45916273 - 45916163
Alignment:
Q  63 catgatatcagtgggagaatgcacggagtcagcttccggatcatgttagaattgtcgagatcagcgccaatgactcttggttccgtgacatgggacccac 162  Q
    |||||| | ||||||||||||| |||| |||||| || |||||||||||  | || ||||| ||| |||| || |||||||| |||||||| ||||||||    
T  45916273 catgattttagtgggagaatgcgcggaatcagctacctgatcatgttagggtcgttgagattagctccaacgattcttggtttcgtgacattggacccac 45916174  T
Q  163 cgtgagttttt 173  Q
     ||||||||||    
T  45916173 tgtgagttttt 45916163  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 34607204 - 34607257
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34607204 cataggaatactgcaataaactctaataataggttctgatccatattctcaaca 34607257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 34632299 - 34632349
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctca 61  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  34632299 cataggaatactacaataaactccaataataggttctgatccatattctca 34632349  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 34607308 - 34607266
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatcca 53  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  34607308 cataggaatacagcaataaactctaataataggttctgatcca 34607266  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 23435101 - 23435154
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23435101 cataggaatactgcaataaactctaataataggttctgatccatattctcaaca 23435154  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 26712989 - 26713043
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaacat 65  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  26712989 cataggaatactacaataaactctaataataggttctgatccatattctcaacat 26713043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 26708738 - 26708791
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  26708738 cataggaatactacaataaactctaataataggttctgatccatattctcaaca 26708791  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 9791411 - 9791464
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  9791411 cataggaatactacaataaactctaataataggttctgatccatattctcaaca 9791464  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 9795750 - 9795803
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  9795750 cataggaatactacaataaactctaataataggttctgatccatattctcaaca 9795803  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 45994872 - 45994925
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45994872 cataggaatactacaataaactctaataataggttctgatccatattctcaaca 45994925  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 45999125 - 45999178
Alignment:
Q  11 cataggaatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45999125 cataggaatactacaataaactctaataataggttctgatccatattctcaaca 45999178  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26763536 - 26763489
Alignment:
Q  17 aatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  26763536 aatactacaataaactctaataataggttctgatccatattctcaaca 26763489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 26767788 - 26767741
Alignment:
Q  17 aatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  26767788 aatactacaataaactctaataataggttctgatccatattctcaaca 26767741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 35926666 - 35926713
Alignment:
Q  17 aatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35926666 aatactacaataaactctaataataggttctgatccatattctcaaca 35926713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 35930915 - 35930962
Alignment:
Q  17 aatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35930915 aatactacaataaactctaataataggttctgatccatattctcaaca 35930962  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 27695216 - 27695263
Alignment:
Q  17 aatactgcaataaactctaataataggttctcatccatattctcaaca 64  Q
    |||||| ||| |||||||||||||||||||| ||||||||||||||||    
T  27695216 aatactacaacaaactctaataataggttctgatccatattctcaaca 27695263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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