View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_high_1 (Length: 799)
Name: NF3646_high_1
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 696; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 696; E-Value: 0
Query Start/End: Original strand, 9 - 773
Target Start/End: Complemental strand, 31141520 - 31140765
Alignment:
| Q |
9 |
attatactcattcaaacatatacacaaggaaaataatattgttttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141520 |
attatactcattcaaacatatacacaaggaaaataatattgctttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
31141421 |
T |
|
| Q |
109 |
aatggatcaaagattttgaaagtgaaaggtaaaggccgttttaaataatctatcttgagttaataattcaatagtttggaaactaaggcaaatttttcaa |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31141420 |
aatggatcaaagattttgaaagtgaaaggtaaaggccgttttaaataatctatcttgagtcaataattcaatagtttggaaactaaggcaaatttttcaa |
31141321 |
T |
|
| Q |
209 |
tattttaataatccttgacttaaggataattaatggaaggaagaaggacaggtcattaagtggggcccacatacaatttcctgctgcattcctattccaa |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141320 |
tattttaataatccttgacttaaggataattaatggaaggaagaaggacaggtcattaagtggggcccacatacaatttcctgctgcattcctattccaa |
31141221 |
T |
|
| Q |
309 |
tttcatgaccatcttccaaactcttgattttatatattaaaagtgcattcctattgaatatagtaaaaaatactctatatggcaacgtcaagttcattca |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31141220 |
tttcatgaccatcttccaaactcttgattttatatattaaaagtgcattcctattgaatatagtaaaaaatactctatatggcaacatcaagttcattca |
31141121 |
T |
|
| Q |
409 |
gccatattaattaatggcaaccttagtaatcattaataaccaatactaattcaactagaaatgaaaacatactcttgaacatcatgtttttcttaaccaa |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141120 |
gccatattaattaatggcaaccttagtaatcattaataaccaatactaattcaactagaaatgaaaacatactcttgaacatcatgtttttcttaaccaa |
31141021 |
T |
|
| Q |
509 |
acactcttcaacattttcaaccacaaataaaagaacaaaataaataagagtgaaataaatttagtccacaaaattgtagattgatgttggtgttaatata |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31141020 |
acactcttcaacattttcaaccacaaataaaagaacaaaataaataagagtgaaataaatttagtccacaaaattgtagattgatgttggtgttaatata |
31140921 |
T |
|
| Q |
609 |
atccnnnnnnnctaatgaaatttggaaacgatctctaaacttaaaatcattaatcacattaatcttagataacaatttcaaagagtaaatttactatcaa |
708 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31140920 |
atccaaaaaaactaatgaaatttggaaacgatctctaaac---------ttaatcacattaatcttagataacaatttcaaagagtaaatttactatcaa |
31140830 |
T |
|
| Q |
709 |
ctggattgacacatatgattagacattccgctcacatccgcgtaatttagaattcctcatgatta |
773 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31140829 |
ctggattgacacatatgattagacattctgctcacatccgcgtaatttagaattcctcatgatta |
31140765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 405 - 747
Target Start/End: Original strand, 31197935 - 31198274
Alignment:
| Q |
405 |
ttcagccatattaattaatggcaaccttagtaatcattaataaccaatactaattcaacta------gaaatgaaaacatactcttgaacatcatgtttt |
498 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||| |||||||||||||| | ||| |||||||| | |||| |||||||| |||| |
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| T |
31197935 |
ttcagccatattaattaatgacaaccctataaatcattaataatcaatactaattcaaattcaatttgaagtgaaaacacaatcttaaacatcatttttt |
31198034 |
T |
|
| Q |
499 |
tcttaaccaaacactcttcaacattttcaaccacaaataaaa-gaacaaaataaataagagtgaaataaatttagtccacaaaattgtagattgatgttg |
597 |
Q |
| |
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| |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
31198035 |
t---aaccgaacactcttcaacgttttcaaccacaaataaaaagaacaaaataaataagagtggaataactttaggccttaaaattgtagattgatgtt- |
31198130 |
T |
|
| Q |
598 |
gtgttaatataatccnnnnnnnctaatgaaatttggaaacgatctctaaacttaaaatcattaatcacattaatcttagataacaatttcaaagagtaaa |
697 |
Q |
| |
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||| |||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31198131 |
-----aatttaatccatgaaa-ctaatgaaatttggaaatgatctctaaatttaaaaccattaatcacattagtcttagataacaatttcaaagagtaaa |
31198224 |
T |
|
| Q |
698 |
tttactatcaactggattgacacatatgattagacattccgctcacatcc |
747 |
Q |
| |
|
|||| |||||| ||||||| |||||| |||||||||| ||||||||| |
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|
| T |
31198225 |
tttattatcaagaagattgacgcatatgcttagacattctactcacatcc |
31198274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 31192431 - 31192542
Alignment:
| Q |
9 |
attatactcattcaaacatatacacaaggaaaataatattgttttcccttattcaaagataaagtcaaggatagtttatcacaagtcacacaacagccaa |
108 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |
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|
| T |
31192431 |
attatactcattcaaacatagacacaaggaaaataatattgttttcccttattcaaagataaagttaaggagag-ttatcacaagtcacacaacagccaa |
31192529 |
T |
|
| Q |
109 |
aatggatcaaaga |
121 |
Q |
| |
|
||||||||||||| |
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|
| T |
31192530 |
aatggatcaaaga |
31192542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 31197283 - 31197456
Alignment:
| Q |
63 |
aaagataaagtcaaggatagtttatcacaagtcacacaacagccaaaatggatcaaagattttgaaagtgaaaggtaaa-ggccgttttaaataatc--t |
159 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||| | |
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|
| T |
31197283 |
aaagttaaagtcaaggagagtc-atcacaagtcacacaacagccaaaatagatcaaagattttgaaagtgaaaggtaaacacccgttttgaataatctat |
31197381 |
T |
|
| Q |
160 |
atcttgagttaataattcaatagtttggaaact-aaggca--aat---ttttcaatattttaataatccttgact |
228 |
Q |
| |
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|||||| || || |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
31197382 |
atcttgcgtcaagaattcaatagtttggaaactaaaggcaacaatgtattttcaatattttaataatccttgact |
31197456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 31197476 - 31197537
Alignment:
| Q |
277 |
acatacaatttcctgctgcattcctattccaatttcatgaccatcttccaaactcttgatttt |
339 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31197476 |
acatacaatttcctg-tgcattcctattccaatttcatgaccatcttccaaactcttgatttt |
31197537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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