View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_high_5 (Length: 327)
Name: NF3646_high_5
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_high_5 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 37333213 - 37332917
Alignment:
| Q |
13 |
aatatcgaagataataattcatgtcttaaatcaactaatcttcatatagcgccaattcnnnnnnnnnnnnnnnnnnnnnnntatattagaagttggtaac |
112 |
Q |
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| T |
37333213 |
aatatcgaagataataattcatgtcttaaatcaactaatcttcatatagcgccaattcaaaaagaaaaaaggaaaaaaaaatatattagaagttggtaac |
37333114 |
T |
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| Q |
113 |
caatatcatnnnnnnnnntgttggtaaccatgatggaagttcaatgacaaannnnnnn-gagggaaagttcaataacgtgaattaatggtatttatttat |
211 |
Q |
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| T |
37333113 |
caatatcataaaaaaaaatgttggtaaccatgatggaagttcaatgacaaattttttttgagggaaagttcaataacgtgaattaatggtattttttttt |
37333014 |
T |
|
| Q |
212 |
ttttt---caatcgaatgcagcttttttattatgaaaatggagnnnnnnntattctacctctcttattctatttaattatttcaatgtatatgttcac |
306 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37333013 |
ttttttttcaatcgaatgcagcttttttattatgaaaatggag-aaaaaatattctacctctcttattctatttaattatttcaatgtatatgttcac |
37332917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 25539256 - 25539312
Alignment:
| Q |
14 |
atatcgaagataataattcatgtcttaaatcaactaatcttcatatagcgccaattc |
70 |
Q |
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||||| ||| |||| |||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
25539256 |
atatcaaagctaatcattcatgtctgaaatcaactgatcttcatatagtgccaattc |
25539312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 25539530 - 25539559
Alignment:
| Q |
222 |
gaatgcagcttttttattatgaaaatggag |
251 |
Q |
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| T |
25539530 |
gaatgcagcttttttattatgaaaatggag |
25539559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 5880808 - 5880766
Alignment:
| Q |
260 |
attctacctctcttattctatttaattatttcaatgtatatgt |
302 |
Q |
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| T |
5880808 |
attctacctctcttattctatctaattattccaatgtatatgt |
5880766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 40652280 - 40652212
Alignment:
| Q |
183 |
aataacgtgaattaatggtatttatttattttttcaatcgaatgcagcttttttattatgaaaatggag |
251 |
Q |
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| T |
40652280 |
aataacgtaaattaatggtacagtttttttctttcacttgaatgcagcttttttattatgaaaatggag |
40652212 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 40651792 - 40651750
Alignment:
| Q |
260 |
attctacctctcttattctatttaattatttcaatgtatatgt |
302 |
Q |
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||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
40651792 |
attctacctctcttattctatctaatttttccaatgtatatgt |
40651750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 51601 - 51643
Alignment:
| Q |
260 |
attctacctctcttattctatttaattatttcaatgtatatgt |
302 |
Q |
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|||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
51601 |
attccacctctcttattctatctaattattccaatgtatatgt |
51643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 302
Target Start/End: Complemental strand, 147033 - 146991
Alignment:
| Q |
260 |
attctacctctcttattctatttaattatttcaatgtatatgt |
302 |
Q |
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|||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
147033 |
attccacctctcttattctatctaattattccaatgtatatgt |
146991 |
T |
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