View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3646_high_8 (Length: 253)

Name: NF3646_high_8
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3646_high_8
NF3646_high_8
[»] chr5 (21 HSPs)
chr5 (1-245)||(18606951-18607195)
chr5 (161-200)||(16434396-16434435)
chr5 (149-200)||(37472599-37472650)
chr5 (160-207)||(41600897-41600944)
chr5 (140-201)||(18288044-18288105)
chr5 (149-198)||(31264446-31264495)
chr5 (144-200)||(5467975-5468031)
chr5 (160-200)||(40211962-40212002)
chr5 (161-200)||(11596469-11596508)
chr5 (153-200)||(19737488-19737535)
chr5 (144-199)||(43554528-43554583)
chr5 (149-211)||(7997168-7997230)
chr5 (164-198)||(22423829-22423863)
chr5 (150-192)||(26205763-26205805)
chr5 (144-205)||(25863205-25863266)
chr5 (155-200)||(28296334-28296379)
chr5 (153-198)||(28588680-28588725)
chr5 (153-198)||(30098334-30098379)
chr5 (144-197)||(39695996-39696049)
chr5 (156-200)||(21577117-21577161)
chr5 (160-200)||(43208287-43208327)
[»] chr3 (21 HSPs)
chr3 (129-205)||(52369776-52369852)
chr3 (144-207)||(12704654-12704717)
chr3 (147-199)||(3730165-3730217)
chr3 (153-211)||(13807164-13807222)
chr3 (141-211)||(25652025-25652095)
chr3 (144-205)||(7931595-7931656)
chr3 (160-192)||(12987752-12987784)
chr3 (143-207)||(21211287-21211351)
chr3 (153-200)||(20691325-20691372)
chr3 (149-204)||(25365464-25365519)
chr3 (144-199)||(25892467-25892522)
chr3 (153-200)||(40150577-40150624)
chr3 (152-198)||(1830351-1830397)
chr3 (149-211)||(15864828-15864890)
chr3 (149-211)||(24205043-24205105)
chr3 (153-203)||(33006826-33006876)
chr3 (150-200)||(34189433-34189483)
chr3 (154-200)||(37077364-37077410)
chr3 (152-200)||(21149073-21149121)
chr3 (144-200)||(25074795-25074851)
chr3 (144-196)||(51512180-51512232)
[»] chr6 (24 HSPs)
chr6 (151-219)||(6299499-6299567)
chr6 (151-219)||(6306309-6306377)
chr6 (144-201)||(34446570-34446627)
chr6 (143-211)||(6389738-6389806)
chr6 (149-201)||(12086347-12086399)
chr6 (149-201)||(12235521-12235573)
chr6 (149-200)||(13689195-13689246)
chr6 (164-199)||(15443702-15443737)
chr6 (161-205)||(13211295-13211339)
chr6 (167-199)||(33141265-33141297)
chr6 (144-211)||(17168460-17168527)
chr6 (154-196)||(9024183-9024225)
chr6 (161-199)||(29049892-29049930)
chr6 (165-207)||(29711261-29711303)
chr6 (144-198)||(30781291-30781345)
chr6 (155-200)||(7569176-7569221)
chr6 (153-194)||(8931608-8931649)
chr6 (153-198)||(9617442-9617487)
chr6 (144-201)||(26247431-26247488)
chr6 (153-198)||(30866150-30866195)
chr6 (112-205)||(34229455-34229548)
chr6 (169-205)||(2140503-2140539)
chr6 (153-197)||(9629392-9629436)
chr6 (144-200)||(19602178-19602234)
[»] chr4 (24 HSPs)
chr4 (150-205)||(19230312-19230367)
chr4 (129-199)||(31243530-31243600)
chr4 (144-237)||(20743275-20743368)
chr4 (144-211)||(24343502-24343569)
chr4 (149-211)||(12084215-12084277)
chr4 (153-200)||(14465300-14465347)
chr4 (154-200)||(18513248-18513294)
chr4 (155-200)||(5654599-5654644)
chr4 (160-201)||(43299984-43300025)
chr4 (160-201)||(43300621-43300662)
chr4 (164-208)||(5176982-5177026)
chr4 (160-200)||(10546154-10546194)
chr4 (144-207)||(8820407-8820470)
chr4 (164-199)||(23915136-23915171)
chr4 (153-199)||(25390892-25390938)
chr4 (155-197)||(46180944-46180986)
chr4 (144-201)||(3144649-3144706)
chr4 (154-199)||(6285061-6285106)
chr4 (153-198)||(33950144-33950189)
chr4 (144-200)||(34589705-34589759)
chr4 (164-197)||(44796979-44797012)
chr4 (161-205)||(2976695-2976739)
chr4 (153-197)||(11110212-11110256)
chr4 (149-201)||(16402213-16402265)
[»] chr1 (21 HSPs)
chr1 (144-207)||(6936397-6936460)
chr1 (150-201)||(11634127-11634178)
chr1 (154-201)||(40747780-40747827)
chr1 (166-200)||(48785283-48785317)
chr1 (144-201)||(42004944-42005001)
chr1 (143-199)||(39101178-39101234)
chr1 (153-196)||(2445880-2445923)
chr1 (153-200)||(11412774-11412821)
chr1 (163-206)||(11571585-11571628)
chr1 (153-200)||(24176373-24176420)
chr1 (160-198)||(609471-609509)
chr1 (164-198)||(1262892-1262926)
chr1 (161-199)||(3921674-3921712)
chr1 (149-207)||(22794080-22794138)
chr1 (162-200)||(43609833-43609871)
chr1 (162-199)||(17080896-17080933)
chr1 (170-207)||(24806944-24806981)
chr1 (153-198)||(36878469-36878514)
chr1 (162-199)||(43942331-43942368)
chr1 (155-211)||(6427345-6427401)
chr1 (154-198)||(30847727-30847771)
[»] chr8 (22 HSPs)
chr8 (155-200)||(3508058-3508103)
chr8 (154-198)||(8798838-8798882)
chr8 (160-199)||(37225756-37225795)
chr8 (144-199)||(40063958-40064013)
chr8 (156-201)||(30068037-30068082)
chr8 (129-201)||(13009475-13009547)
chr8 (131-199)||(13845241-13845309)
chr8 (153-205)||(33697147-33697199)
chr8 (149-201)||(35431142-35431194)
chr8 (150-201)||(3658152-3658203)
chr8 (150-205)||(9936815-9936870)
chr8 (160-199)||(12985399-12985438)
chr8 (148-199)||(28883879-28883930)
chr8 (144-211)||(44067511-44067578)
chr8 (169-199)||(14227229-14227259)
chr8 (160-198)||(29198492-29198530)
chr8 (149-199)||(39820436-39820486)
chr8 (155-200)||(22770968-22771013)
chr8 (153-198)||(31236583-31236628)
chr8 (149-201)||(1676717-1676769)
chr8 (154-198)||(3025559-3025603)
chr8 (160-200)||(26466561-26466601)
[»] chr7 (18 HSPs)
chr7 (144-201)||(5938477-5938534)
chr7 (144-205)||(17780081-17780142)
chr7 (153-200)||(2525850-2525897)
chr7 (153-200)||(38134412-38134459)
chr7 (144-201)||(23930224-23930281)
chr7 (144-199)||(29812661-29812716)
chr7 (144-211)||(43249988-43250055)
chr7 (149-199)||(3801207-3801257)
chr7 (153-219)||(19206037-19206103)
chr7 (162-200)||(35238199-35238237)
chr7 (162-200)||(44172905-44172943)
chr7 (154-199)||(4909158-4909203)
chr7 (153-198)||(24146824-24146869)
chr7 (150-211)||(38804558-38804619)
chr7 (156-196)||(7133287-7133327)
chr7 (149-201)||(23751905-23751957)
chr7 (155-199)||(36314635-36314679)
chr7 (153-197)||(41229304-41229348)
[»] chr2 (20 HSPs)
chr2 (150-214)||(10535762-10535826)
chr2 (149-205)||(12748685-12748741)
chr2 (144-211)||(24011031-24011098)
chr2 (144-199)||(25544488-25544543)
chr2 (169-207)||(2073941-2073979)
chr2 (154-200)||(18570978-18571024)
chr2 (144-201)||(30563414-30563471)
chr2 (160-200)||(4690296-4690336)
chr2 (144-196)||(11308001-11308053)
chr2 (144-200)||(19573984-19574040)
chr2 (155-199)||(19613621-19613665)
chr2 (144-200)||(23354649-23354705)
chr2 (162-205)||(10250727-10250770)
chr2 (153-200)||(34006997-34007044)
chr2 (164-199)||(44605156-44605191)
chr2 (154-200)||(23406874-23406920)
chr2 (154-222)||(30394441-30394509)
chr2 (160-200)||(31026701-31026741)
chr2 (164-199)||(36611906-36611942)
chr2 (164-200)||(40681988-40682024)
[»] scaffold0011 (1 HSPs)
scaffold0011 (153-199)||(240027-240073)
[»] scaffold0598 (1 HSPs)
scaffold0598 (149-201)||(8055-8107)
[»] scaffold0007 (1 HSPs)
scaffold0007 (150-200)||(225271-225321)
[»] scaffold0022 (1 HSPs)
scaffold0022 (155-200)||(99899-99944)
[»] scaffold0199 (1 HSPs)
scaffold0199 (149-201)||(1954-2006)
[»] scaffold0037 (1 HSPs)
scaffold0037 (164-208)||(102903-102947)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 18606951 - 18607195
Alignment:
Q  1 ttgattttgagtggagaactggtatggcagccattgatcggcacggtattgcaaagaaatacaacgttgatgtaagtttctcaatttattactataaaat 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||    
T  18606951 ttgattttgagtggaaaactggtatggcagccattgatcggcacagtattgcaaagaaaaccaacgttgatgtaagtttctcaatttattactgtaaaat 18607050  T
Q  101 acagacactcctcggattagaggtgttccggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18607051 acagacactcctcggactagaggtgttccggtgtcggacaccaacacagacacgacacctatgattacattgaattatgttattttctcaaattattatc 18607150  T
Q  201 catgttggcgtattggtgtatgatgtccatgtccgtgtctgtgct 245  Q
    ||||| || |||| ||||| ||||||||||||||||||| |||||    
T  18607151 catgtcggtgtatcggtgtctgatgtccatgtccgtgtccgtgct 18607195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 16434396 - 16434435
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  16434396 atgattatattgaattatgttattttttcaaattattatc 16434435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 37472599 - 37472650
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||| ||||||||||| ||||||||| |||||||| ||||||||||    
T  37472599 gacacgacacatatgattatatcgaattatgtcattttctcgaattattatc 37472650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 41600944 - 41600897
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  41600944 tatgattatattgaattgtgtaattttctcaaattattatcaatgttg 41600897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 18288044 - 18288105
Alignment:
Q  140 accaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||||  |||| |||||||||||||||| ||| ||| || ||||||||||||||||||||    
T  18288044 accaacattgacatgacacctatgattatactgagttaagtcattttctcaaattattatcc 18288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 5467975 - 5468031
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||||||||||| |||| | |||||||||| ||||| |||||||||||||    
T  5467975 acaccgacacgacacctataattacactgaattatgtgattttatcaaattattatc 5468031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 40212002 - 40211962
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  40212002 tatgattatattgaattatgtaattttctcaatttattatc 40211962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 11596469 - 11596508
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  11596469 atgattacattgaattatgtcattttctcaaattattatc 11596508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 19737488 - 19737535
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||  |||||||||||| |||||||||||||||||||    
T  19737488 cgacacatatgattgcattgaattatgtaattttctcaaattattatc 19737535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 43554583 - 43554528
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  43554583 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 7997168 - 7997230
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||||||||| ||| |||| | || ||||| | |||||||||||||||||||| |||||||||    
T  7997168 gacacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgt 7997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 22423829 - 22423863
Alignment:
Q  164 attatattgaattatgttattttctcaaattatta 198  Q
    ||||||||||||||||| |||||||||||||||||    
T  22423829 attatattgaattatgtgattttctcaaattatta 22423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 26205763 - 26205805
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaa 192  Q
    |||||||||||||||||| | |||||||||| |||||||||||    
T  26205763 acacgacacctatgattacactgaattatgtcattttctcaaa 26205805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 25863266 - 25863205
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||| |||||||||| ||| |||| | |||||||| | |||||||||||||||||| |||||    
T  25863266 acactgacacgacacttataattacactgaattatatcattttctcaaattattatacatgt 25863205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 28296379 - 28296334
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  28296379 acacatatgagtacattgaattatgtcattttctcaaattattatc 28296334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 28588680 - 28588725
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||||||| |||| | |||||||||| |||||||||||||||||    
T  28588680 cgacacctataattacactgaattatgtgattttctcaaattatta 28588725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 30098379 - 30098334
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    ||||| |||| |||| |||||||||||| |||||||||||||||||    
T  30098379 cgacatctataattacattgaattatgtgattttctcaaattatta 30098334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 39695996 - 39696049
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattatt 197  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||    
T  39695996 acaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  156 cacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||| |||| | | ||||||||||||||||||||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 43208287 - 43208327
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  43208287 tatgattacattgaattatgtcattttctcaaattactatc 43208327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 52369852 - 52369776
Alignment:
Q  129 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||||| || ||| |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  52369852 cggtgtccgataccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattatccatgt 52369776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 12704654 - 12704717
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    |||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||||| |||||    
T  12704654 acaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 3730165 - 3730217
Alignment:
Q  147 cagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||||||||||||||||| | |||||||||| ||| ||||||||||||||    
T  3730165 cagacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 13807222 - 13807164
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| |||||  |||||||||    
T  13807222 cgacacatattattatattgaattatgtgattttctcaaattgttatcagtgttggcgt 13807164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 25652025 - 25652095
Alignment:
Q  141 ccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    ||||||| ||||| |||||||| | || | |||||||| | |||||||||||||||||||| |||||||||    
T  25652025 ccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgttggcgt 25652095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 7931595 - 7931656
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||||||||||||||||| |||| | ||||||| |||||| |||||||||| |||| ||||    
T  7931595 acacagacacgacacctataattacactgaattacgttattctctcaaattactatctatgt 7931656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 12987784 - 12987752
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaa 192  Q
    |||||||||||||||||||||||||||||||||    
T  12987784 tatgattatattgaattatgttattttctcaaa 12987752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 21211351 - 21211287
Alignment:
Q  143 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    ||||| ||||||||||| || |||| | |||| ||||| |||||||||||||||||||| |||||    
T  21211351 aacaccgacacgacacccataattacactgaactatgtaattttctcaaattattatccgtgttg 21211287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 20691372 - 20691325
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||| | |||||||||| |||||||||||||||||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 25365519 - 25365464
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatg 204  Q
    |||||||||| |||||||| |  ||||||||| || ||||||||||||||||||||    
T  25365519 gacacgacacttatgattacaccgaattatgtcatattctcaaattattatccatg 25365464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 25892522 - 25892467
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| ||||||||||||||||||| | |||||||| | ||||||| ||||||||||    
T  25892522 acactgacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 40150577 - 40150624
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||| |||||||||| | |||||||||||||||||||    
T  40150577 cgacacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  152 acgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 15864890 - 15864828
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    ||||||||||||||||||| | | |||||| | ||||| |||||||||||||| ||| |||||    
T  15864890 gacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcggcgt 15864828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 24205043 - 24205105
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  24205043 gacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 24205105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 33006876 - 33006826
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatccat 203  Q
    ||||||||| ||||| | |||||||||| ||||| ||||||||||||||||    
T  33006876 cgacacctacgattaaactgaattatgtaattttatcaaattattatccat 33006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||||| ||||| | |||| ||||| |||||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 37077410 - 37077364
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||| |||||||  ||||||||||||||| ||||||||||||||||    
T  37077410 gacacatatgattccattgaattatgttatattctcaaattattatc 37077364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 21149121 - 21149073
Alignment:
Q  152 acgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| || |||||| | |||||||||| |||||||||||||||||||    
T  21149121 acgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 25074851 - 25074795
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||||| || |||||||||| | | |||||||| |||||||||||||||||||    
T  25074851 acaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 51512180 - 51512232
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattat 196  Q
    |||| |||||||||| |||||||  |||||||||||| ||||| |||||||||    
T  51512180 acaccgacacgacacatatgattccattgaattatgtgattttatcaaattat 51512232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 6299567 - 6299499
Alignment:
Q  151 cacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 219  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgt 6299499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 6306377 - 6306309
Alignment:
Q  151 cacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 219  Q
    |||||||||||| |||| |||||||||| | |||||||||||||||||||||||| ||||| |||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatccatgtcggcgtgttggtgt 6306309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 34446627 - 34446570
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||    
T  34446627 acaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 6389806 - 6389738
Alignment:
Q  143 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    ||||| ||||||||||||||||||| | | |||||| | |||||||||||||||||||| ||| |||||    
T  6389806 aacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgt 6389738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 12086347 - 12086399
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | |||||||||| ||| ||||||||||||||||    
T  12086347 gacacgacacctatgattaaactgaattatgtcattatctcaaattattatcc 12086399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 12235521 - 12235573
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | |||||||||| |||||||| |||||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 13689195 - 13689246
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||| ||||||||||| |||||| | |||||||||||||||||||||||    
T  13689195 gacacgatacctatgattacattgaaatttgttattttctcaaattattatc 13689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 15443737 - 15443702
Alignment:
Q  164 attatattgaattatgttattttctcaaattattat 199  Q
    ||||||||||||||||||||||||||||||||||||    
T  15443737 attatattgaattatgttattttctcaaattattat 15443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 13211295 - 13211339
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||    
T  13211295 atgattatattaaattatgtcattttctcaaattattatcaatgt 13211339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 33141297 - 33141265
Alignment:
Q  167 atattgaattatgttattttctcaaattattat 199  Q
    |||||||||||||||||||||||||||||||||    
T  33141297 atattgaattatgttattttctcaaattattat 33141265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 17168460 - 17168527
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| |||||||||||||| |||| | | |||||| | |||||||||||||||||||  |||||||||    
T  17168460 acaccgacacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgt 17168527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 9024183 - 9024225
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattat 196  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  9024183 gacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 29049930 - 29049892
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  29049930 atgattacattgaattatgtaattttctcaaattattat 29049892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 29711303 - 29711261
Alignment:
Q  165 ttatattgaattatgttattttctcaaattattatccatgttg 207  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||    
T  29711303 ttataatgaattatgtcattttctcaaattattatcgatgttg 29711261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 30781291 - 30781345
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||| |||| |||||||||||||| | | |||||||| |||||||||||||||||    
T  30781291 acaccgacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 7569176 - 7569221
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||| |||| | |||||||||| |||||||||||||||||||    
T  7569176 acacctataattacactgaattatgtaattttctcaaattattatc 7569221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 194
Target Start/End: Original strand, 8931608 - 8931649
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaatt 194  Q
    |||||| ||| |||||| ||||||||||||||||||||||||    
T  8931608 cgacacatataattatactgaattatgttattttctcaaatt 8931649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 9617487 - 9617442
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  9617487 cgacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 26247488 - 26247431
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||||| ||||||||||||| | || ||||| ||||||| ||||||||||||    
T  26247488 acaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 30866150 - 30866195
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  30866150 cgacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 34229548 - 34229455
Alignment:
Q  112 tcggattagaggtgttccggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||||||||| |||| |||||||| || ||| ||||  ||||| || |||| |||| | ||| || ||| ||||| ||||||||||||||||||    
T  34229548 tcggattagatgtgtcccggtgtccgacaccgacaccaacacggcatctattattacactgacttgtgtcattttttcaaattattatccatgt 34229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 2140503 - 2140539
Alignment:
Q  169 attgaattatgttattttctcaaattattatccatgt 205  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  2140503 attgaattatgtcattttctcaaattattatcaatgt 2140539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 9629436 - 9629392
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatt 197  Q
    |||||| ||| |||| |||||||||||| ||||||||||||||||    
T  9629436 cgacacatataattacattgaattatgtgattttctcaaattatt 9629392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 19602178 - 19602234
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||||| | ||||||||||| | |||||||| | |||||||||||||||||||    
T  19602178 acaccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 19230312 - 19230367
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  19230312 acacgacacctataattacattgaattatgttattttctcaaattattatctatgt 19230367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 31243530 - 31243600
Alignment:
Q  129 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||| || |||||||| |||| |||||||||||||| | |||||||||| ||||||||||||||||||    
T  31243530 cggtgtccgacaccaacaccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 20743275 - 20743368
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgtatgatgtccatgtccgtg 237  Q
    |||| ||||| ||||||||||||| | |||||||||| |||||||||||||||||||| ||| ||||| |  ||||  |||||| |||||||||    
T  20743275 acaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgttcgatgtctatgtccgtg 20743368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 24343569 - 24343502
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| |||||||||||||| |||| | |||||||||| |||||||||||||||||||| ||| |||||    
T  24343569 acaccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcggcgt 24343502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 12084277 - 12084215
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||||||||||||| ||||||||||||| |  ||||||||||||||||||||  |||||||||    
T  12084277 gacacgacacctataattatattgaattttactattttctcaaattattatcggtgttggcgt 12084215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 14465300 - 14465347
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  14465300 cgacacatatgattaaattgaattatgtcattttctcaaattattatc 14465347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 18513248 - 18513294
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  18513248 gacacatatgattacattgaattatgtcattttctcaaattattatc 18513294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 5654599 - 5654644
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||||| |||||||||||| |||||||||||||||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatc 5654644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 43299984 - 43300025
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  43299984 tatgattacattgaattatgtaattttctcaaattattatcc 43300025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 43300662 - 43300621
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  43300662 tatgattacattgaattatgtaattttctcaaattattatcc 43300621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 5177026 - 5176982
Alignment:
Q  164 attatattgaattatgttattttctcaaattattatccatgttgg 208  Q
    |||| |||||||||||||||||||||||| ||||||| |||||||    
T  5177026 attacattgaattatgttattttctcaaaatattatcaatgttgg 5176982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 10546194 - 10546154
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||| |||||||||||| |||||||||||||||||||    
T  10546194 tatgattacattgaattatgtcattttctcaaattattatc 10546154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 8820470 - 8820407
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    |||| |||||||||| ||||| |  |||||||||||| ||||| ||||||||||||| ||||||    
T  8820470 acaccgacacgacacatatgactccattgaattatgtgattttatcaaattattatcgatgttg 8820407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 23915171 - 23915136
Alignment:
Q  164 attatattgaattatgttattttctcaaattattat 199  Q
    |||||||||||||||||||||||||||||| |||||    
T  23915171 attatattgaattatgttattttctcaaatgattat 23915136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 25390892 - 25390938
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||||| |||| |||||||||||||||| ||||||| ||||||||||    
T  25390892 cgacacatatggttatattgaattatgtcattttctaaaattattat 25390938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 46180944 - 46180986
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattatt 197  Q
    |||| |||||||| | |||||||||||||||||||||||||||    
T  46180944 acacatatgattacactgaattatgttattttctcaaattatt 46180986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 3144649 - 3144706
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||| ||||||||||||    
T  3144649 acaccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 6285061 - 6285106
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||||| || |||||||||||| || |||||||||||||||||    
T  6285061 gacacctataatcatattgaattatattgttttctcaaattattat 6285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 33950189 - 33950144
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||| |||||||| ||| |||||||| |||||||||||||||||    
T  33950189 cgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 34589705 - 34589759
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||||||||||  ||||||| |||||||||||| ||||||||||||| |||||    
T  34589705 acactgacacgacac--atgattacattgaattatgtcattttctcaaattgttatc 34589759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 44796979 - 44797012
Alignment:
Q  164 attatattgaattatgttattttctcaaattatt 197  Q
    |||| |||||||||||||||||||||||||||||    
T  44796979 attacattgaattatgttattttctcaaattatt 44797012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 2976739 - 2976695
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||    
T  2976739 atgattacattcaattatgtcattttctcaaattattacccatgt 2976695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 11110256 - 11110212
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatt 197  Q
    |||||| |||||||| || ||||||||| ||||||||||||||||    
T  11110256 cgacacatatgattacatcgaattatgtcattttctcaaattatt 11110212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 16402213 - 16402265
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||| |||| |||| | || || |||||||||||||||||||||||||    
T  16402213 gacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 6936397 - 6936460
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    |||||||||||||||||||||||| | | |||||||| ||||||||| |||||||||| |||||    
T  6936397 acacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttg 6936460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 11634127 - 11634178
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatcc 11634178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 40747780 - 40747827
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  40747780 gacacctataattacattgaattatgtcattttctcaaattattatcc 40747827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 48785283 - 48785317
Alignment:
Q  166 tatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||||||||||||||||||||||||||||    
T  48785283 tatattgaattatgttattttctcaaattattatc 48785317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 42004944 - 42005001
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||    
T  42004944 acaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 39101178 - 39101234
Alignment:
Q  143 aacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||| || ||||||||||| |||| | | |||||||||||||||||||||||||||    
T  39101178 aacaccgaaacgacacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 2445923 - 2445880
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattat 196  Q
    |||||| |||||||| |||||||||||| |||||||||||||||    
T  2445923 cgacacatatgattaaattgaattatgtcattttctcaaattat 2445880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 11412774 - 11412821
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||||||||| | |||||||||||| ||||||||| |||||||||    
T  11412774 cgacacctatgatcacattgaattatgtcattttctcatattattatc 11412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 11571628 - 11571585
Alignment:
Q  163 gattatattgaattatgttattttctcaaattattatccatgtt 206  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  11571628 gattacattgaattatgtcattttctcaaattattatccttgtt 11571585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 24176373 - 24176420
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||| |||| | ||||| ||||||||||||||||||||||||    
T  24176373 cgacacctataattacactgaatgatgttattttctcaaattattatc 24176420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 609471 - 609509
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattatta 198  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  609471 tatgattatgttgaattatgtaattttctcaaattatta 609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 1262926 - 1262892
Alignment:
Q  164 attatattgaattatgttattttctcaaattatta 198  Q
    ||||||||||||||||| |||||||||||||||||    
T  1262926 attatattgaattatgtgattttctcaaattatta 1262892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 3921712 - 3921674
Alignment:
Q  161 atgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  3921712 atgattacattgaattatgtcattttctcaaattattat 3921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 22794080 - 22794138
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttg 207  Q
    |||||||||||||| |||| | || ||||||| ||||| |||||||||||||| |||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttg 22794138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 43609833 - 43609871
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  43609833 tgattacattcaattatgttattttctcaaattattatc 43609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 17080896 - 17080933
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattat 199  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  17080896 tgattacattcaattatgttattttctcaaattattat 17080933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 24806981 - 24806944
Alignment:
Q  170 ttgaattatgttattttctcaaattattatccatgttg 207  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  24806981 ttgaattatgttattttctcaaaattttatccatgttg 24806944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 36878514 - 36878469
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||||||| |||| | |||||||||| |||||||||||||||||    
T  36878514 cgacacctataattacactgaattatgtgattttctcaaattatta 36878469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 43942368 - 43942331
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattat 199  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  43942368 tgattacattgaattatgttattttctcaaatcattat 43942331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 6427401 - 6427345
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| ||| |||| |||||||||||| ||||||||||||||||| |  |||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgt 6427345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 30847727 - 30847771
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    ||||| |||||||| |||||||||||| ||||| |||||||||||    
T  30847727 gacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 3508103 - 3508058
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||    
T  3508103 acacatatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 8798838 - 8798882
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||    
T  8798838 gacacatataattatattgaattatgttattttctcaaattatta 8798882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Original strand, 37225756 - 37225795
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattat 199  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  37225756 tatgattacattgaattatgttattttctcaaattattat 37225795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 40064013 - 40063958
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| |||||||| |||||||||| | |||||||||| ||||||||||||||||||    
T  40064013 acaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 30068037 - 30068082
Alignment:
Q  156 cacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||    
T  30068037 cacctacgattatactgaattatgtcattttctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 13009475 - 13009547
Alignment:
Q  129 cggtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||| || ||| |||| |||||||||| |||||||| | | |||||| || |||||||||||||||||||    
T  13009475 cggtgtctgacacctacaccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 13845309 - 13845241
Alignment:
Q  131 gtgtcggaaaccaacacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||| || ||| ||||||||||||||||||||||||   | |||||| | ||||||||||||||||||    
T  13845309 gtgtccgacaccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 33697147 - 33697199
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||||| |||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  33697147 cgacacgtatggttatattcaattattttattttctcaaattattatcaatgt 33697199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 35431142 - 35431194
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | | || ||||| ||||||||||||||||||||    
T  35431142 gacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 3658203 - 3658152
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||||||||||||||||| | |||| ||  ||||||||||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatcc 3658152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 9936870 - 9936815
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||| |||| ||||||||||||||||||| | ||||||| ||||||||||| ||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatcgatgt 9936815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 12985438 - 12985399
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattat 199  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  12985438 tatgattacattgaattatgtgattttctcaaattattat 12985399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 28883879 - 28883930
Alignment:
Q  148 agacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||| |||||||||||||  | |||||||||| ||||||||||||||||||    
T  28883879 agacaagacacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 44067578 - 44067511
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  44067578 acaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 44067511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 14227259 - 14227229
Alignment:
Q  169 attgaattatgttattttctcaaattattat 199  Q
    |||||||||||||||||||||||||||||||    
T  14227259 attgaattatgttattttctcaaattattat 14227229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 29198492 - 29198530
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  29198492 tatgattacattgaattatgtcattttctcaaattatta 29198530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Complemental strand, 39820486 - 39820436
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  39820486 gacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 22771013 - 22770968
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||||| ||||||||||||| |||| |||||||||||||    
T  22771013 acacatatgattacattgaattatgttgttttatcaaattattatc 22770968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 31236583 - 31236628
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||    
T  31236583 cgacacatataattacattgaattatgtgattttctcaaattatta 31236628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 1676769 - 1676717
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | | || ||||| |||||| |||||||||||||    
T  1676769 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1676717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 3025603 - 3025559
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    ||||||||| |||| | |||||||||| |||||||||||||||||    
T  3025603 gacacctataattacactgaattatgtgattttctcaaattatta 3025559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 26466561 - 26466601
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||  |||||||||| |||||||||||||||||||||    
T  26466561 tatgattgcattgaattatcttattttctcaaattattatc 26466601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 5938534 - 5938477
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||| |||||||| |||||| |||||||||||||||| ||||||||||||||    
T  5938534 acaccgacacaacacctataattatactgaattatgttattttatcaaattattatcc 5938477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 17780081 - 17780142
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||| |||||||||||||| |||| || ||||||||| ||||||| ||||||||||||||||    
T  17780081 acaccgacacgacacctattattacatagaattatgtcattttcttaaattattatccatgt 17780142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 2525850 - 2525897
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| ||||||||||||||||||||| |||| ||||||||||||||    
T  2525850 cgacacatatgattatattgaattatgtcatttgctcaaattattatc 2525897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 38134412 - 38134459
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  38134412 cgacacatatgattacattgaattatgtcattttctcaaattattatc 38134459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 23930281 - 23930224
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||| ||||||||||||| | |||||||||| |||||||||||||| |||||    
T  23930281 acaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 29812661 - 29812716
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| ||||||||||||||||||| | | |||||| | ||||||||||||||||||    
T  29812661 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 43250055 - 43249988
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| |||||||||| ||| |||| | || ||||||| |||||||||||||||||||| ||| |||||    
T  43250055 acaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgt 43249988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 3801207 - 3801257
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||| |||| ||||||||  ||||||||||||||||||| ||||||||||    
T  3801207 gacaccacacttatgattaccttgaattatgttattttcttaaattattat 3801257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 19206103 - 19206037
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgt 219  Q
    |||||| ||| |||||| |||||||||| ||||||||||||||||| |  ||| ||||| |||||||    
T  19206103 cgacacatataattataatgaattatgtgattttctcaaattattagcggtgtcggcgtgttggtgt 19206037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 35238199 - 35238237
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattatc 35238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 44172905 - 44172943
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  44172905 tgattacattgaattatgtcattttctcaaattattatc 44172943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 4909203 - 4909158
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    ||||| |||||||| | |||||||||| ||||||||||||||||||    
T  4909203 gacacatatgattacaatgaattatgtaattttctcaaattattat 4909158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 24146869 - 24146824
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatta 198  Q
    |||||| ||| ||||||||||||||||| ||||||| |||||||||    
T  24146869 cgacacatataattatattgaattatgtgattttctaaaattatta 24146824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 38804558 - 38804619
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    ||||||||||||||||||   || ||||||| ||||||| |||||||||||| ||| |||||    
T  38804558 acacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcggcgt 38804619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 7133287 - 7133327
Alignment:
Q  156 cacctatgattatattgaattatgttattttctcaaattat 196  Q
    |||||||||||| | |||||||||| |||||||||||||||    
T  7133287 cacctatgattacactgaattatgtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 23751957 - 23751905
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | | |||||| | ||||| ||||||||||||||    
T  23751957 gacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 36314635 - 36314679
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| |||||||| |||||| ||||| ||||||||||||||||||    
T  36314635 acacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 41229304 - 41229348
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattatt 197  Q
    |||| ||||||||||||  ||||||||| ||||||||||||||||    
T  41229304 cgacgcctatgattatacagaattatgtcattttctcaaattatt 41229348  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 10535762 - 10535826
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtatt 214  Q
    ||||||||| |||||||| | |||||||||| |||||||||||||||||||  ||| ||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtcggcgtatt 10535826  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 12748741 - 12748685
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    ||||| ||||||||||||| | |||| ||||| ||||||||||||||||||||||||    
T  12748741 gacacaacacctatgattacactgaactatgtcattttctcaaattattatccatgt 12748685  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 24011098 - 24011031
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgt 211  Q
    |||| ||| ||||||||||||||| | | |||||||| ||||||||||||||||||| |||| |||||    
T  24011098 acaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatcaatgtcggcgt 24011031  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 25544543 - 25544488
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| ||||||||||||||||||| | |||||||| | ||||||||||||||||||    
T  25544543 acaccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 207
Target Start/End: Complemental strand, 2073979 - 2073941
Alignment:
Q  169 attgaattatgttattttctcaaattattatccatgttg 207  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  2073979 attgaattatgttattttctcaaattattatcgatgttg 2073941  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 18571024 - 18570978
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  18571024 gacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 30563471 - 30563414
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    |||| ||||| ||||||||  ||| |||||||||||| ||||||||||||||||||||    
T  30563471 acaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 4690336 - 4690296
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||| |||| ||||||||||||||||||||||||||||    
T  4690336 tatgattgtattaaattatgttattttctcaaattattatc 4690296  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 11308001 - 11308053
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattat 196  Q
    |||| ||||||||||||||||||| | |||||||||| ||||| |||||||||    
T  11308001 acaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 19574040 - 19573984
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||| ||||||| |||| | |||||||||||||||||| |||||||||||    
T  19574040 acaccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 19613621 - 19613665
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||    
T  19613621 acacatatcattacattgaattatgttattttctcaaattattat 19613665  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 23354649 - 23354705
Alignment:
Q  144 acacagacacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||||||||||||||||||| | | |||||| | |||||||||||||||||||    
T  23354649 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 10250770 - 10250727
Alignment:
Q  162 tgattatattgaattatgttattttctcaaattattatccatgt 205  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  10250770 tgattacattgaattgtgttattttctcaaattattatcaatgt 10250727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 34006997 - 34007044
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||||||||||| | |||||||||| | |||||||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 199
Target Start/End: Original strand, 44605156 - 44605191
Alignment:
Q  164 attatattgaattatgttattttctcaaattattat 199  Q
    |||| |||||||||||||||||||||||||||||||    
T  44605156 attacattgaattatgttattttctcaaattattat 44605191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 200
Target Start/End: Complemental strand, 23406920 - 23406874
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||||||||||  |||||||||| ||||||| |||||||||||    
T  23406920 gacacctatgattattctgaattatgtaattttcttaaattattatc 23406874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 30394509 - 30394441
Alignment:
Q  154 gacacctatgattatattgaattatgttattttctcaaattattatccatgttggcgtattggtgtatg 222  Q
    |||||||||||||||| |||||||||| |||||||| ||| ||| ||  |||| | || ||||||||||    
T  30394509 gacacctatgattatactgaattatgtcattttctccaatgattgtctgtgttagagtgttggtgtatg 30394441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  160 tatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 199
Target Start/End: Complemental strand, 36611942 - 36611906
Alignment:
Q  164 attatattgaa-ttatgttattttctcaaattattat 199  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36611942 attatattgaaattatgttattttctcaaattattat 36611906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 40682024 - 40681988
Alignment:
Q  164 attatattgaattatgttattttctcaaattattatc 200  Q
    |||| |||||||||||| |||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatc 40681988  T

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Target: scaffold0011 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 240027 - 240073
Alignment:
Q  153 cgacacctatgattatattgaattatgttattttctcaaattattat 199  Q
    |||||| |||||||| |||||||||| ||||||||||||||||||||    
T  240027 cgacacatatgattacattgaattatattattttctcaaattattat 240073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 8055 - 8107
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||| ||||||| ||| | |||||||||| ||||||||||||||||||||    
T  8055 gacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 225271 - 225321
Alignment:
Q  150 acacgacacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    ||||||||| ||| |||| |||| ||||||| |||||||||||||||||||    
T  225271 acacgacacttataattacattgtattatgtcattttctcaaattattatc 225321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 99944 - 99899
Alignment:
Q  155 acacctatgattatattgaattatgttattttctcaaattattatc 200  Q
    |||| ||| |||| |||||||||||||||||||| |||||||||||    
T  99944 acacatataattacattgaattatgttattttctaaaattattatc 99899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 2006 - 1954
Alignment:
Q  149 gacacgacacctatgattatattgaattatgttattttctcaaattattatcc 201  Q
    ||||||||||||||||||| | | || ||||| |||||| |||||||||||||    
T  2006 gacacgacacctatgattacactaaaatatgtcattttcacaaattattatcc 1954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 102947 - 102903
Alignment:
Q  164 attatattgaattatgttattttctcaaattattatccatgttgg 208  Q
    |||| |||||||||| | ||||||||||||||||||| |||||||    
T  102947 attacattgaattatatcattttctcaaattattatcgatgttgg 102903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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