View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_high_9 (Length: 214)
Name: NF3646_high_9
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_high_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 54347689 - 54347894
Alignment:
| Q |
12 |
gtacgtacttccattgctatattaattcaatctgattgtgttata---ctacttaagaattatggctgaggagaaaacaccagttcagctgaagtctctt |
108 |
Q |
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| T |
54347689 |
gtacgtacttccattgctatattaattcaatctgattgtgttatataactacttaagaattatggctgaggagaaaacaccagttcagctgaagtctctt |
54347788 |
T |
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| Q |
109 |
gaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaagt |
208 |
Q |
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| T |
54347789 |
gaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaagt |
54347888 |
T |
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| Q |
209 |
agtgac |
214 |
Q |
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| T |
54347889 |
agtgac |
54347894 |
T |
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 26152414 - 26152478
Alignment:
| Q |
142 |
aacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
206 |
Q |
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| T |
26152414 |
aacaagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 26152277 - 26152338
Alignment:
| Q |
145 |
aagtttgctttcgcctgtgctatattggcttccatgacttccattttacttggttatggtaa |
206 |
Q |
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| T |
26152277 |
aagtatgcttttgcttgtgctatgttggcttccatgacttccattttgcttggatatggtaa |
26152338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 209
Target Start/End: Original strand, 27318348 - 27318460
Alignment:
| Q |
97 |
ctgaagtctcttgaggattttgattctcaaaagaaacccgaatcgaacaagtttgctttcgcctgtgctatattggcttccatgacttccattttacttg |
196 |
Q |
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| T |
27318348 |
ctgaaatctcttgaagattttggtcctcaaaaaaagctcaaaaggaacaagtttgcttgtgcttgtgctatcttggcttctatgacttctatcctacttg |
27318447 |
T |
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| Q |
197 |
gttatggtaagta |
209 |
Q |
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| T |
27318448 |
gatatggtaagta |
27318460 |
T |
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