View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_low_12 (Length: 246)
Name: NF3646_low_12
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34324172 - 34324393
Alignment:
| Q |
1 |
ctccctcttccgtaataactccttccactctctctatggccgnnnnnnnnnnnnnnn-gaatagcaaattttattcacgtcgaggcaatgcaaggagcaa |
99 |
Q |
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| T |
34324172 |
ctccctcttccttaataactccttccactctctctatggccgttttttttttctttttgaatagcaaattttattcacgtcaaggcaatgcaaggagcaa |
34324271 |
T |
|
| Q |
100 |
taaacactcgcggaaaggaagggaaaaaatacaacaaaagcgccgcaaatataagagacaccataactccaaaaatagaccccccaaaggtacccaaatc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34324272 |
taaacactcgcggaaaggaagggaaaaaatacaacaaaagcgccgcaaatatacgggacatcataactccaaaaatagaccccccaaaggtacccaaatc |
34324371 |
T |
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| Q |
200 |
agtcatgaggccaacatataca |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
34324372 |
agtcatgaggccaacatataca |
34324393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 30248916 - 30248953
Alignment:
| Q |
4 |
cctcttccgtaataactccttccactctctctatggcc |
41 |
Q |
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| T |
30248916 |
cctcttccgtaataactccttccactctctcgatggcc |
30248953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 17990011 - 17990094
Alignment:
| Q |
69 |
tttattcacgtcgaggcaatgcaaggagcaataaacactcgcggaaaggaagggaaaaaatacaacaaaagcgccgcaaatata |
152 |
Q |
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||||||| || |||| ||||||||||||| |||||||||||| || | |||||||||||||| | | |||||||||||||| |
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| T |
17990011 |
tttattctcgacgagctaatgcaaggagcataaaacactcgcggcaaaaatgggaaaaaatacaagagaggcgccgcaaatata |
17990094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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