View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3646_low_16 (Length: 204)

Name: NF3646_low_16
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3646_low_16
NF3646_low_16
[»] chr8 (29 HSPs)
chr8 (15-190)||(19469625-19469800)
chr8 (15-190)||(19540549-19540724)
chr8 (15-190)||(19591974-19592149)
chr8 (17-190)||(19410626-19410799)
chr8 (17-190)||(19457645-19457818)
chr8 (17-190)||(19523260-19523433)
chr8 (31-190)||(19468689-19468848)
chr8 (31-190)||(19555610-19555769)
chr8 (92-190)||(19376538-19376636)
chr8 (92-190)||(19390504-19390602)
chr8 (92-186)||(19345090-19345184)
chr8 (84-190)||(19404661-19404767)
chr8 (90-186)||(19504159-19504255)
chr8 (92-186)||(19355394-19355488)
chr8 (101-190)||(19172913-19173002)
chr8 (99-186)||(19337381-19337468)
chr8 (25-87)||(19344996-19345058)
chr8 (93-190)||(19287636-19287733)
chr8 (25-84)||(19390418-19390477)
chr8 (25-87)||(19504285-19504347)
chr8 (25-87)||(19355300-19355362)
chr8 (112-190)||(19370901-19370979)
chr8 (17-83)||(19404567-19404633)
chr8 (112-190)||(19341121-19341199)
chr8 (17-83)||(19376436-19376502)
chr8 (17-83)||(19448333-19448399)
chr8 (17-83)||(19532677-19532743)
chr8 (25-86)||(19173044-19173105)
chr8 (31-87)||(19337286-19337342)
[»] chr1 (2 HSPs)
chr1 (92-186)||(36314753-36314847)
chr1 (25-87)||(36314879-36314941)
[»] chr6 (1 HSPs)
chr6 (92-190)||(19542987-19543085)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 19469800 - 19469625
Alignment:
Q  15 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469800 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 19469701  T
Q  115 aaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19469700 aaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19469625  T

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Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 19540724 - 19540549
Alignment:
Q  15 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540724 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 19540625  T
Q  115 aaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19540624 aaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19540549  T

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Target: chr8; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 19591974 - 19592149
Alignment:
Q  15 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19591974 cacagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggacca 19592073  T
Q  115 aaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19592074 aaagaaggagaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19592149  T

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Target: chr8; HSP #4
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 19410626 - 19410799
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggaccaaa 116  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19410626 cagacgttttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttcagataaatttaatcttgaatgggaaccaaa 19410725  T
Q  117 agaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19410726 acaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19410799  T

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Target: chr8; HSP #5
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 19457645 - 19457818
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggaccaaa 116  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19457645 cagacgttttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttcagataaatttaatcttgaatgggaaccaaa 19457744  T
Q  117 agaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19457745 acaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19457818  T

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Target: chr8; HSP #6
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 19523433 - 19523260
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggaccaaa 116  Q
    ||||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  19523433 cagacgttttgatcccaatgatgaagttaggcgttaatcgaaaaacaggacataattggtcattggtttcagataaatttaatcttgaatgggaaccaaa 19523334  T
Q  117 agaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19523333 acaaggtgaattgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19523260  T

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Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 19468848 - 19468689
Alignment:
Q  31 ccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggaccaaaagaaggagaattga 130  Q
    |||| ||||||||| || |||||||| ||||| |||||||| |||||||||||||||| | |||||||||| || |||| ||||||| |||| |||||||    
T  19468848 ccaacgatgaagttaggcgttaatcggaaaacaggacataattggtcattggtttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattga 19468749  T
Q  131 acatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19468748 tcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19468689  T

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Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 19555769 - 19555610
Alignment:
Q  31 ccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttcagataaatttaatcttgaatggggaccaaaagaaggagaattga 130  Q
    |||| ||||||||| || |||||||| ||||| |||||||| |||||||||||||||| | |||||||||| || |||| ||||||| |||| |||||||    
T  19555769 ccaacgatgaagttaggcgttaatcggaaaacaggacataattggtcattggtttcaggtgaatttaatctagattgggaaccaaaacaaggtgaattga 19555670  T
Q  131 acatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19555669 tcatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19555610  T

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Target: chr8; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 19376538 - 19376636
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||| |||||| |||| ||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19376538 aatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 19376636  T

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Target: chr8; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 19390504 - 19390602
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||| ||||||||||| ||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19390504 aatttagtcttgaatgggaaccaaaacaaggggaattgaacatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttat 19390602  T

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Target: chr8; HSP #11
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 19345090 - 19345184
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatgga 186  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| |||||||||    
T  19345090 aatttagtcttgaatgggaaccaaaagaaggtgaattgaacatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatgga 19345184  T

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Target: chr8; HSP #12
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 19404661 - 19404767
Alignment:
Q  84 ttcagataaatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaat 183  Q
    ||||| |||||||| |||||| |||| ||||||| |||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||    
T  19404661 ttcaggtaaatttagtcttgagtgggaaccaaaacaaggtgaactgaacatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgat 19404760  T
Q  184 ggattat 190  Q
    |||||||    
T  19404761 ggattat 19404767  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 19504255 - 19504159
Alignment:
Q  90 taaatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatgga 186  Q
    |||||||| ||||| ||||| |||||||||| | ||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19504255 taaatttagtcttgtatgggaaccaaaagaacgtgaattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttaaaagcaatgga 19504159  T

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Target: chr8; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 19355394 - 19355488
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatgga 186  Q
    |||||| ||||||||||| |||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  19355394 aatttagtcttgaatgggaaccaaaagaaggtgaattgaacataaggaaaagcggcaaagtgcattggaaaagcggaaaacttagaagtaatgga 19355488  T

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Target: chr8; HSP #15
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 19173002 - 19172913
Alignment:
Q  101 ttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    ||||||||| |||||  ||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||    
T  19173002 ttgaatgggaaccaatggaaggtgaattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattat 19172913  T

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Target: chr8; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 19337381 - 19337468
Alignment:
Q  99 tcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatgga 186  Q
    ||||||||||| |||||||||||| ||||||||||| | |||||| ||||||||| |||||||||| |||||||| ||||||||||||    
T  19337381 tcttgaatgggaaccaaaagaaggtgaattgaacatcaggaaaagtggcaaagtgcattggaaaagtggaaaactcaaaagcaatgga 19337468  T

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Target: chr8; HSP #17
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 19344996 - 19345058
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca 87  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19344996 ttgatcccaacgatgaagttgggagttaatcgaaaaactggacataattggtcattggtttca 19345058  T

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Target: chr8; HSP #18
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 19287636 - 19287733
Alignment:
Q  93 atttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    ||||| ||||||||||| ||| |||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||| || | ||||||| ||||    
T  19287636 atttagtcttgaatgggaacctaaagaaggtgaattgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttat 19287733  T

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Target: chr8; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 19390418 - 19390477
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtt 84  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  19390418 ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtt 19390477  T

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Target: chr8; HSP #20
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 19504347 - 19504285
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca 87  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  19504347 ttgatctcaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca 19504285  T

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Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 19355300 - 19355362
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca 87  Q
    |||||||||| ||||||||| || |||||||||||||| |||||||| |||||||||||||||    
T  19355300 ttgatcccaacgatgaagttaggtgttaatcgaaaaacaggacataattggtcattggtttca 19355362  T

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Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 19370901 - 19370979
Alignment:
Q  112 ccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||| |||| ||||||||||||| ||||||   ||||||||| |||||||||| |||||||||| ||||||||||||||    
T  19370901 ccaagagaaagagaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttagaagcaatggattat 19370979  T

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Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 19404567 - 19404633
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggt 83  Q
    ||||||| |||||||||| ||||||||| ||||||||||||||||| | |||||| |||||||||||    
T  19404567 cagacgttttgatcccaacgatgaagttaggagttaatcgaaaaacagcacataattggtcattggt 19404633  T

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Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 19341121 - 19341199
Alignment:
Q  112 ccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||| |||| ||||||||||||| ||||||   ||||||||| |||||||||| |||||||||  ||||||||||||||    
T  19341121 ccaagagaaagagaattgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttggaagcaatggattat 19341199  T

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Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 19376436 - 19376502
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggt 83  Q
    ||||||| |||||||||| ||||||||| || |||||||||||||| ||| |||| |||||||||||    
T  19376436 cagacgttttgatcccaacgatgaagttaggcgttaatcgaaaaacaggatataattggtcattggt 19376502  T

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Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 19448333 - 19448399
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggt 83  Q
    ||||||| |||||||||| ||||||||| || ||||||| |||||| |||||||| |||||||||||    
T  19448333 cagacgttttgatcccaacgatgaagttaggcgttaatcaaaaaacaggacataattggtcattggt 19448399  T

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Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 19532743 - 19532677
Alignment:
Q  17 cagacgtattgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggt 83  Q
    ||||||| |||||||||| ||||||||| || ||||||| |||||| |||||||| |||||||||||    
T  19532743 cagacgttttgatcccaacgatgaagttaggcgttaatcaaaaaacaggacataattggtcattggt 19532677  T

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Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 19173105 - 19173044
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttc 86  Q
    |||||||||| ||||||||| || ||||| |||||||| |||||||| ||||||||||||||    
T  19173105 ttgatcccaacgatgaagttaggtgttaaccgaaaaaccggacataattggtcattggtttc 19173044  T

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Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 19337286 - 19337342
Alignment:
Q  31 ccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca 87  Q
    |||| ||||||||| || |||||||| ||||| |||||||| |||||||||||||||    
T  19337286 ccaacgatgaagttaggtgttaatcgtaaaacaggacataattggtcattggtttca 19337342  T

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Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 36314847 - 36314753
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatgga 186  Q
    |||||| ||||||||||| ||||||| |||| ||||||||||| || ||| |||| ||||||||||||||||| |||||||||||||||||||||    
T  36314847 aatttagtcttgaatgggaaccaaaacaaggtgaattgaacatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatgga 36314753  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 36314941 - 36314879
Alignment:
Q  25 ttgatcccaatgatgaagttgggagttaatcgaaaaactggacataaatggtcattggtttca 87  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  36314941 ttgatcccaacgatgaagttgggagttaatcgaaaaacaggacataattggtcattggtttca 36314879  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 19542987 - 19543085
Alignment:
Q  92 aatttaatcttgaatggggaccaaaagaaggagaattgaacatgaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattat 190  Q
    |||||| ||||||||||| ||||||  || | |||||| | || |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  19542987 aatttagtcttgaatgggaaccaaagcaacgtgaattggaaatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttat 19543085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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