View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_low_17 (Length: 203)
Name: NF3646_low_17
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 41709201 - 41709050
Alignment:
| Q |
19 |
gggcataactattgaagaaaacaataatctgctttaaactgtgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaactttgag |
118 |
Q |
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| T |
41709201 |
gggcataactattgaagaaaacaataatctgctttaaattgtgttgcattttaagctatctcca----------------cagaagaaattaactttgag |
41709118 |
T |
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| Q |
119 |
gaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacatcactggaaatttat |
186 |
Q |
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| T |
41709117 |
gaaaactggattaaaatcaatcattgcatctgtctcagtcatattgaattacatcactggaaatttat |
41709050 |
T |
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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 14112421 - 14112469
Alignment:
| Q |
138 |
atcattgcatctgtctcagtcatattgaattacatcactggaaatttat |
186 |
Q |
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| T |
14112421 |
atcattgcatctgtcttagtcatattgaattacatcactggaaatttat |
14112469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 14111755 - 14111806
Alignment:
| Q |
60 |
tgttgcattttaagctatctccagaatcttctgctcctgcagaagaaattaa |
111 |
Q |
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| T |
14111755 |
tgttgcattttaagctatctccataatcttttgctcctccagaagaagttaa |
14111806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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