View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3646_low_4 (Length: 341)

Name: NF3646_low_4
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3646_low_4
NF3646_low_4
[»] chr2 (1 HSPs)
chr2 (1-323)||(11258096-11258436)
[»] chr1 (2 HSPs)
chr1 (1-323)||(52275444-52275781)
chr1 (1-302)||(24425427-24425746)
[»] chr3 (1 HSPs)
chr3 (1-323)||(8456935-8457275)
[»] chr7 (1 HSPs)
chr7 (1-320)||(31660294-31660628)
[»] chr4 (1 HSPs)
chr4 (4-323)||(26420852-26421192)
[»] chr8 (3 HSPs)
chr8 (55-237)||(5211027-5211230)
chr8 (1-50)||(5211325-5211374)
chr8 (258-321)||(36460048-36460111)
[»] chr5 (1 HSPs)
chr5 (258-321)||(14677231-14677294)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 11258436 - 11258096
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11258436 gacccaacaacatttcaacccatgaaatcaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 11258337  T
Q  101 gtgttggaacaaaaaacgttacaaaacgttca------------------acaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 182  Q
    |||||||||||| ||| |||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11258336 gtgttggaacaagaaaagttacaaaacgttcatcaaattctaaatgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 11258237  T
Q  183 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttcttagc 282  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  11258236 aaaagtttcagcttcaattccagaaactgacccgacccagattcatgttgacccgattgtgagaaattttggtgaaggtcttcttcttacgcttcttagc 11258137  T
Q  283 tccaccacgaagacgaagagcaaggtggagagtggattcgt 323  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11258136 tccaccacgaagacgaagagcaaggtggagagtggattcgt 11258096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 52275781 - 52275444
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275781 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 52275682  T
Q  101 gtgttggaacaaaaaacgttacaaaacgttca------------------acaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 182  Q
    |||||||||||| ||| |||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52275681 gtgttggaacaagaaaagttacaaaacgttcatcaaattctaaacgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 52275582  T
Q  183 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttcttagc 282  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||   ||||||||||||||||    
T  52275581 aaaagtttcagcttcagttccagaaactgacccaacccagattcatgttgacccgattgtgagaaattttggtgaaggtct---tcttacgcttcttagc 52275485  T
Q  283 tccaccacgaagacgaagagcaaggtggagagtggattcgt 323  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  52275484 tccaccacgaagacgaagagcaaggtggagagtggattcgt 52275444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 24425746 - 24425427
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 100  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24425746 gaccgaacaacatttcaacccatgaaacaaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 24425647  T
Q  101 gtgttggaacaaaaaacgttacaaaacgttca------------------acaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 182  Q
    |||||||||||| ||| |||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24425646 gtgttggaacaagaaaagttacaaaacgttcatcaagttctaaacgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 24425547  T
Q  183 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttcttagc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  24425546 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaaattttggtgaaggtcttcttcttacgcttcttagc 24425447  T
Q  283 tccaccacgaagacgaagag 302  Q
    ||||||||||||||||||||    
T  24425446 tccaccacgaagacgaagag 24425427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 8457275 - 8456935
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  8457275 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgtaaaagatattggacaaaatgtggtgctttaaggaacataccagttg 8457176  T
Q  101 gtgttggaacaaaaaacgttacaaaac------------------gttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 182  Q
    |||||||||||| ||| ||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8457175 gtgttggaacaagaaaagttacaaaactttcatcaaattctaaacgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 8457076  T
Q  183 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttcttagc 282  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  8457075 aaaagtttcagcttcagttccagaaattgacccgacccagattcatgttgacccgattgtgagaaattttggtgaaggtcttcttcttacgcttcttagc 8456976  T
Q  283 tccaccacgaagacgaagagcaaggtggagagtggattcgt 323  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  8456975 tccaccaccaagacgaagatcaaggtggagagtggattcgt 8456935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 31660628 - 31660294
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31660628 gacccaacaacatttcaacccatgaaatcaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttg 31660529  T
Q  101 gtgttggaacaaaaaacgttacaaaacgttca------------------acaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 182  Q
    |||||||||||| ||| |||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31660528 gtgttggaacaagaaaagttacaaaacgttcatcaaattctaaacgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagc 31660429  T
Q  183 aaaagtttcagcttcagttccagaaactgacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttcttagc 282  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||   ||||||||||||||||    
T  31660428 aaaagtttcagcttcagttccagaaaccgacccgacccagattcatgttgacccgattgtgagaaattttggtgaaggtct---tcttacgcttcttagc 31660332  T
Q  283 tccaccacgaagacgaagagcaaggtggagagtggatt 320  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31660331 tccaccacgaagacgaagagcaaggtggagagtggatt 31660294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 26420852 - 26421192
Alignment:
Q  4 ccaacaacatttcaacccatgaaaccaaattttccagaacaagaacattgcaaaagatattgggcaaaaggtggtgctttaaggaacataccagttggtg 103  Q
    ||||||||||||||| ||||||||||||  |||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26420852 ccaacaacatttcaaaccatgaaaccaatattttgagaacaagaacattgcaaaagatattggacaaaaggtggtgctttaaggaacataccagttggtg 26420951  T
Q  104 ttggaacaaaaaacgttacaaaa-------------------cgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagcagcaa 184  Q
    ||||||||| ||| |||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26420952 ttggaacaagaaaagttacaaaaacgttcatcaaattctaaacgttcaacaacaccatcttcatcttctccatcaacatcatccacttcttcagtagcaa 26421051  T
Q  185 aagtttcagcttcagttccagaaact-----gacccgacccagattcatgttgacccgattgtgagaattttttgtgaaggtcttcttcttacgcttctt 279  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||| | |||||   ||||||||||||||||    
T  26421052 aagtttcagcttcagttccagaaactgacccgacccgacccagattcatgttgacccgattgtgagaaattttggcgaagg---tcttcttacgcttctt 26421148  T
Q  280 agctccaccacgaagacgaagagcaaggtggagagtggattcgt 323  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  26421149 agctccaccacgaagacgaagagcaaggtggtgagtggactcgt 26421192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 237
Target Start/End: Complemental strand, 5211230 - 5211027
Alignment:
Q  55 aaaagatattgggcaaaaggtggtgctttaaggaacataccagttggtgttggaacaaaaaacgttacaaaacgttca------------------acaa 136  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||| || ||||||||||||                  ||||    
T  5211230 aaaagatattggacaaaaggtggtgctttgaggaacataccagttggtggtggaacaagaaaagtcacaaaacgttcatcaaattccaaacgttcaacaa 5211131  T
Q  137 caccatcttcatcttctccatcaacatcatccac---ttcttcagcagcaaaagtttcagcttcagttccagaaactgacccgacccagattcatgttga 233  Q
    |||||||||| |||||||||||| ||||| | ||   ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5211130 caccatcttcttcttctccatcagcatcaacaaccagttcttcagcagcaaaagtttcggcttcagtttcagaaactgacccgacccagattcatgttga 5211031  T
Q  234 cccg 237  Q
    ||||    
T  5211030 cccg 5211027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5211374 - 5211325
Alignment:
Q  1 gacccaacaacatttcaacccatgaaaccaaattttccagaacaagaaca 50  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5211374 gaccaaacaacatttcaacccatgaaaccaaattttccagaacaagaaca 5211325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 36460111 - 36460048
Alignment:
Q  258 aggtcttcttcttacgcttcttagctccaccacgaagacgaagagcaaggtggagagtggattc 321  Q
    ||||||||||||||||||||||||| |||||||||||||| ||  ||||||| |||||||||||    
T  36460111 aggtcttcttcttacgcttcttagcgccaccacgaagacgtaggacaaggtgaagagtggattc 36460048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 14677294 - 14677231
Alignment:
Q  258 aggtcttcttcttacgcttcttagctccaccacgaagacgaagagcaaggtggagagtggattc 321  Q
    ||||||||||||| | |||||| || |||||||| ||||| ||| ||||||| |||||||||||    
T  14677294 aggtcttcttcttcctcttcttcgcgccaccacggagacggagaacaaggtgaagagtggattc 14677231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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