View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_low_5 (Length: 331)
Name: NF3646_low_5
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 18606527 - 18606842
Alignment:
| Q |
18 |
ccaacgagggtcaccctttacccgataaccacactatcaccgttcaggtataccatgataaagagaaatgatatttgaataaccatgttatcataatttt |
117 |
Q |
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| T |
18606527 |
ccaacgagggtcaccctttacccgataaccacactatcaccgttcaggtataccatgataaagagaaatgatatttgaataaccatgttatcataatttt |
18606626 |
T |
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| Q |
118 |
caatgcataatttcgatcttttgtatttaacatatgccctagcatttccctttaaatacagtatatacatgcaattaaatgaaa--nnnnnnnnnnnnnn |
215 |
Q |
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| T |
18606627 |
caatgcataatttcgatcttttgtatttaacatatgccctagcatttccctttaaatacagtatatacatgcaattaaatgaaaatatatatatatatat |
18606726 |
T |
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| Q |
216 |
nnnnnnccaaaaatatttatttcattatagacaagctagataaatgaagtttatggttgaattaattgtttatgttgtctaggtggctacacatggaagt |
315 |
Q |
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| T |
18606727 |
gatataccaaaaatatttatttcattatagacaagctagataaatgaagtttatggttgaattaattgtttatgttgtctaggtggctacacatggaagt |
18606826 |
T |
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| Q |
316 |
atggcgaaatatcatc |
331 |
Q |
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| T |
18606827 |
atggcgaaatatcatc |
18606842 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 35755980 - 35756021
Alignment:
| Q |
76 |
taaagagaaatgatatttgaataaccatgttatcataatttt |
117 |
Q |
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| T |
35755980 |
taaagagaaatgatatttgaacaaccattttatgataatttt |
35756021 |
T |
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