View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3646_low_8 (Length: 284)
Name: NF3646_low_8
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3646_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 157 - 284
Target Start/End: Complemental strand, 38520296 - 38520169
Alignment:
| Q |
157 |
tccatcgtaataccaaacaaacactaaatttaataagaaacatttagcaagaaattggatctgctttatgcttgtcatttcatatgcacgctttattttt |
256 |
Q |
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| T |
38520296 |
tccatcgtaataccaaacaaacactaaatttaataagaaacatttagcaagaaattggatatgctttatgcttgtcatttcatatgcacgctttattttt |
38520197 |
T |
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| Q |
257 |
tcgtcaagaagaaaacttaggtacaatt |
284 |
Q |
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| T |
38520196 |
tcgtcaaggagaaaacttaggtacaatt |
38520169 |
T |
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Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 38521791 - 38521662
Alignment:
| Q |
7 |
tcgaagaaaatcaagttattcatctcttgtacccaaagttaattctatgtttttatcattg-gggtacctatcgtcggtatgctagaatcaaggtggtac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
38521791 |
tcgaagaaaatcaagttattcatctcttgtacccaaagttaattctatgtttttatcattgtgggtacctatcgtcggtatgctagaatcaaggtggtcc |
38521692 |
T |
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| Q |
106 |
atcttgatttttcaaaagctatagtagttt |
135 |
Q |
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| T |
38521691 |
atcttgatttttcaaaagttatagtagttt |
38521662 |
T |
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