View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3646_low_9 (Length: 265)

Name: NF3646_low_9
Description: NF3646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3646_low_9
NF3646_low_9
[»] chr2 (4 HSPs)
chr2 (172-251)||(34323573-34323652)
chr2 (168-249)||(16642046-16642126)
chr2 (168-251)||(34323360-34323442)
chr2 (171-252)||(10423625-10423706)
[»] chr5 (9 HSPs)
chr5 (168-252)||(16364344-16364428)
chr5 (171-246)||(10731604-10731678)
chr5 (168-251)||(16364551-16364634)
chr5 (168-252)||(29384967-29385049)
chr5 (169-251)||(11991606-11991688)
chr5 (171-245)||(11991077-11991151)
chr5 (171-248)||(993378-993455)
chr5 (171-252)||(7957957-7958038)
chr5 (171-239)||(29382294-29382360)
[»] chr7 (7 HSPs)
chr7 (168-251)||(11668242-11668325)
chr7 (168-230)||(39616970-39617032)
chr7 (168-251)||(11668629-11668711)
chr7 (172-225)||(8648699-8648752)
chr7 (191-251)||(15090607-15090667)
chr7 (171-231)||(44484814-44484873)
chr7 (168-251)||(11482118-11482202)
[»] chr4 (9 HSPs)
chr4 (168-250)||(54851890-54851972)
chr4 (168-250)||(54852316-54852398)
chr4 (171-250)||(54853887-54853966)
chr4 (168-251)||(54854470-54854553)
chr4 (171-248)||(54854899-54854976)
chr4 (170-251)||(54855627-54855708)
chr4 (171-237)||(27435643-27435709)
chr4 (169-239)||(44274024-44274093)
chr4 (168-228)||(6949686-6949746)
[»] chr3 (8 HSPs)
chr3 (171-251)||(27080172-27080252)
chr3 (168-246)||(40243888-40243966)
chr3 (168-251)||(18194883-18194966)
chr3 (169-246)||(9393257-9393334)
chr3 (170-224)||(40736848-40736902)
chr3 (168-231)||(18194661-18194724)
chr3 (209-246)||(40243755-40243792)
chr3 (172-221)||(10822519-10822568)
[»] chr1 (1 HSPs)
chr1 (170-250)||(2017848-2017928)
[»] chr8 (1 HSPs)
chr8 (168-251)||(22439256-22439339)
[»] chr6 (1 HSPs)
chr6 (168-224)||(30122940-30122996)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 34323652 - 34323573
Alignment:
Q  172 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  34323652 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatctttttgtgtcttttgtttcaatctccc 34323573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 16642126 - 16642046
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctc 249  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  16642126 accaaaaatacaatcttaccccttcttaattttttgacaa-ttatcaaaattatatccttttgcgtcttttgtttcaacctc 16642046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 34323442 - 34323360
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||||||||||||||||||| ||||||||||| |   |||||||||||||||  ||||||||||||||| |||||||||||    
T  34323442 accaaaaatacaatcttacccctacttaatttttt-agtcgtcatcaaaattatacacttttgtgtcttttgcttcaacctccc 34323360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 10423706 - 10423625
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccct 252  Q
    |||||||||||||||   |||||||||||||| ||| ||||||||||||||||| |||||||||||||| | |||| |||||    
T  10423706 aaaaatacaatcttatatcttcttaattttttaacacgtcatcaaaattatatctttttgtgtcttttgctccaacttccct 10423625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 16364344 - 16364428
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccct 252  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||  ||||||||||||    
T  16364344 accaaaaatacaatcttaccccttcttaattttttgacacgtcatcaaaattatatcctgttgtgtcttttacttcaacctccct 16364428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 10731678 - 10731604
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaac 246  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  10731678 aaaaatacaatcttacctcttcttaattttttgacacgtcatcaaaattatat-cttttgtgtcttttgcttcaac 10731604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 16364551 - 16364634
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||||||||||| ||||| || ||||||||||||   ||||||||||||||||| |||||||||||||| |||||||||||    
T  16364551 accaaaaatacaatcctacccatttttaattttttgagtcgtcatcaaaattatatctttttgtgtcttttgcttcaacctccc 16364634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 29384967 - 29385049
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccct 252  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| || |||||  ||| ||||||||| |||||| |||||    
T  29384967 accaaaaatacaatcttaccccttcttaattttttgacacgtcatcaagataatatc--tttttgtcttttgcttcaacttccct 29385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 11991606 - 11991688
Alignment:
Q  169 ccaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||| | ||||||||||||||||||| |||||||| |||||| |||||||| | |||||| ||||||| |||||||||||    
T  11991606 ccaaaaacataatcttaccccttcttaatattttgacacgtcatccaaattataccattttgtatcttttgcttcaacctccc 11991688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 11991077 - 11991151
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaa 245  Q
    ||||||| ||||||||||||||| ||||||||||||  | || |||| ||||||||||||||||||||| |||||    
T  11991077 aaaaatataatcttaccccttctgaattttttgacatattataaaaaatatatccttttgtgtcttttgcttcaa 11991151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 993378 - 993455
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacct 248  Q
    ||||||||||||||||| | |  ||||| ||||||| |||||||||||||||| |||| ||||||||| |||||||||    
T  993378 aaaaatacaatcttacctcattataattatttgacacgtcatcaaaattatattctttcgtgtcttttatttcaacct 993455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 7957957 - 7958038
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccct 252  Q
    |||||||||||||||   |||||||||||||| ||| || |||||||||||||| |||||||||||||| | |||| |||||    
T  7957957 aaaaatacaatcttatttcttcttaattttttaacacgtgatcaaaattatatctttttgtgtcttttgctccaacttccct 7958038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 29382294 - 29382360
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttg 239  Q
    |||||||||||||||||| |||| ||||||||||| | || ||||||| ||||||||||| ||||||||    
T  29382294 aaaaatacaatcttaccctttctcaattttttgac-actcgtcaaaataatatccttttg-gtcttttg 29382360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 11668242 - 11668325
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  11668242 accaaaaatacaatcttaccccttcttaatttttagacacgtcatcaaaattatatccttttgtgtcatttgcttcaacctccc 11668325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 39616970 - 39617032
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttg 230  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39616970 accaaaaatacagtcttaccccttcttaattttttgacatgtcatcaaaattatatccttttg 39617032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 11668629 - 11668711
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||| ||| |||||| |||| ||||||||| |||||| ||||    
T  11668629 accaaaaatacaatcttaacccttcttaatttgttgacacgtcatc-aaactatatcattttatgtcttttgcttcaacgtccc 11668711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 8648699 - 8648752
Alignment:
Q  172 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatcc 225  Q
    |||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||    
T  8648699 aaaatacaatcttatcccttctaaatattttgacacgtcatcaaaattatatcc 8648752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 15090667 - 15090607
Alignment:
Q  191 tcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||||||| ||| || |||||||||||||| | |||||||||||| |||||| ||||    
T  15090667 tcttaattttttaacacgttatcaaaattatatcatgttgtgtcttttgcttcaacgtccc 15090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 44484814 - 44484873
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgt 231  Q
    |||||||||||||||||| |||||||| ||||||||  |||  ||||||||||||||||||    
T  44484814 aaaaatacaatcttaccc-ttcttaatattttgacacatcagtaaaattatatccttttgt 44484873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 11482118 - 11482202
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaatttttt-gacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||| || ||||||||| ||| |||||||||| | || ||||||||||||| |   |||||||||| ||||||||| |||||    
T  11482118 accaaaagtataatcttacctctttttaatttttttggcacgtcatcaaaattacaattttttgtgtctattgtttcaatctccc 11482202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 54851972 - 54851890
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctcc 250  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||    
T  54851972 accaaaaatacaatcttaccccttcttaatattttgacacgtcatcaaaattatatccttttgtgtcttttgctttaacctcc 54851890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 54852398 - 54852316
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctcc 250  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||| ||| || |||||||    
T  54852398 accaaaaatacaatcttaacccttcttaatattttgacacgtcattaaaattatatccttttgtgtctcttgctttaacctcc 54852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 54853966 - 54853887
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctcc 250  Q
    ||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||    
T  54853966 aaaaatacaatcttatccctttttaatattttgacacgtcatcaaaattatatcattttgtgtcttttgctttaacctcc 54853887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 54854553 - 54854470
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||||||||||||||||||||||| | |||||||  || ||||||||||||||||||||| ||||||| ||||| |||||    
T  54854553 accaaaaatacaatcttaccccttcttagtattttgacgcgttatcaaaattatatccttttgtatcttttgcttcaatctccc 54854470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 54854976 - 54854899
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacct 248  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||||||| ||| |||||||||||||| ||||||||    
T  54854976 aaaaatacaatcttactccttcttaatagtttgacacgtcatcaaaattacatcattttgtgtcttttgcttcaacct 54854899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 54855708 - 54855627
Alignment:
Q  170 caaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||||||| |||||| |||||||| ||||||||  ||||||||||||||||||||||||| ||||  |||| ||||||    
T  54855708 caaaaatacaattttaccctttcttaatattttgacacatcatcaaaattatatccttttgtgtttttttcttcagcctccc 54855627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 27435709 - 27435643
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttt 237  Q
    ||||||||||| ||| | |||||||||||||||||| ||| |||||||||||| ||||| |||||||    
T  27435709 aaaaatacaattttatctcttcttaattttttgacatgtcttcaaaattatattcttttatgtcttt 27435643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 44274093 - 44274024
Alignment:
Q  169 ccaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttg 239  Q
    |||||||||||| ||||||| || |||||| ||||| | ||| ||||||||||||||||||||||||||||    
T  44274093 ccaaaaatacaaacttacccatt-ttaattatttgatacgtcgtcaaaattatatccttttgtgtcttttg 44274024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 6949686 - 6949746
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttt 228  Q
    |||||||||| | || ||||||||||||||||||||||| || ||||| ||||||||||||    
T  6949686 accaaaaataaagtcgtaccccttcttaattttttgacacgttatcaacattatatccttt 6949746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 27080172 - 27080252
Alignment:
Q  171 aaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||    
T  27080172 aaaaatacaatattaccccttcttaatcttttgacacgtcatcaaaattatttccttttgtgtcttttgcttcaacctccc 27080252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 40243888 - 40243966
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaac 246  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||| | ||||||    
T  40243888 accaaaaataaaatcttaccccttattaattttttgacacgtcatcaaaattatattcttttgtgtttttcgattcaac 40243966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 18194966 - 18194883
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||| |||||||  | |||| |||||||||||||| ||||||||||||||||| |||||||||||||  |||||| ||||    
T  18194966 accaaaaacacaatctagctccttattaattttttgacacgtcatcaaaattatatcattttgtgtcttttacttcaacttccc 18194883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 9393257 - 9393334
Alignment:
Q  169 ccaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaac 246  Q
    ||||||||||||| |||| ||||||||||| ||||||| ||||  ||| |||||||||||| | ||||||||||||||    
T  9393257 ccaaaaatacaatattactccttcttaattatttgacacgtcaaaaaatttatatccttttttttcttttgtttcaac 9393334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 40736848 - 40736902
Alignment:
Q  170 caaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatc 224  Q
    ||||||||||||||||| |||||||||||||||||||  || |||||||||||||    
T  40736848 caaaaatacaatcttactccttcttaattttttgacacatcgtcaaaattatatc 40736902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 18194724 - 18194661
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgt 231  Q
    ||||||||||||||| ||||||| | ||||||||||||| ||  |||||| |||||||||||||    
T  18194724 accaaaaatacaatcctacccctccctaattttttgacacgttgtcaaaagtatatccttttgt 18194661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 40243755 - 40243792
Alignment:
Q  209 tcatcaaaattatatccttttgtgtcttttgtttcaac 246  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  40243755 tcatcaaaattatatccttttgtgtattttgtttcaac 40243792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 10822568 - 10822519
Alignment:
Q  172 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattat 221  Q
    |||||||||| ||| | ||| |||||||||||||| ||||||||||||||    
T  10822568 aaaatacaattttatctctttttaattttttgacacgtcatcaaaattat 10822519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 2017928 - 2017848
Alignment:
Q  170 caaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctcc 250  Q
    |||| ||||||| ||||||||||||||| ||||||||  ||||||||| |||||  |||||||| ||||||||||||||||    
T  2017928 caaacatacaatattaccccttcttaatattttgacacatcatcaaaagtatatatttttgtgtattttgtttcaacctcc 2017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 22439256 - 22439339
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatccttttgtgtcttttgtttcaacctccc 251  Q
    |||||||| |||||||  | |||| |||||||||||||| ||||||||||||||||| |||||||||||||  |||||| ||||    
T  22439256 accaaaaacacaatctagctccttattaattttttgacacgtcatcaaaattatatcattttgtgtcttttacttcaacttccc 22439339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 30122940 - 30122996
Alignment:
Q  168 accaaaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatc 224  Q
    |||||||||| |||||||||||||||||||||||||| | ||||| ||||| |||||    
T  30122940 accaaaaatataatcttaccccttcttaattttttgatacgtcattaaaatcatatc 30122996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University