View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3647_low_1 (Length: 451)
Name: NF3647_low_1
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 30952035 - 30952426
Alignment:
| Q |
11 |
cataggagggctagggaggttgattccaagtttgttgaagcttctccaaaatttatcgaccttctattgttggttatgttatccagaatcaagtagtgct |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30952035 |
cataggagggctagggaggttgattccaagtttgttgaagcttctccaaaatttatcgaccttctattgttggttatgttatccagaatcaagtagtgct |
30952134 |
T |
|
| Q |
111 |
tgactctctggcgttcaccttgaatttacgtacataatcctctttcaatgtaattgttccattggggaagacttgagaaatcacaaaaggtctaaaccat |
210 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30952135 |
tgactctctggcgttcaccttgaatttccatacataatcctctttcaatgtaattgttccataggggaagacttgagaaatcacaaaaggtctaaaccat |
30952234 |
T |
|
| Q |
211 |
cttgaatttaattttttaggaaatagttttagtttggagttacaaagtaagactttctcccccacttggaattccttttttcgaatcttggcatcatgcc |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30952235 |
cttgaatttaattttttaggaaataggtttagtttggagttacagagtaagactttctcccccacttggaattccttttttcgaatcttggcatcatgcc |
30952334 |
T |
|
| Q |
311 |
atttcttaaccttggacttgtaaacttctgcattttcataagtaataagactattttcttctaattcatggagttacagcattttgcgactcc |
403 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||| | |||||| |
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| T |
30952335 |
atttcctaaccttggacttgtaaacttctaaatttt-ataagtaataagactattttcttctaatttatggagttgcagcatttcgagactcc |
30952426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 62 - 405
Target Start/End: Original strand, 30946189 - 30946523
Alignment:
| Q |
62 |
tttatcgaccttctattgttggttatgttatccagaatcaagtagtgcttgactctctggcgttcaccttgaatttacgtacataatcctctttcaatgt |
161 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||| ||||||| |
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| T |
30946189 |
tttatcgaccttctattgttagttatgttatccagaatcaagtagtgcttgactctttggcgttcaacttgaatttccatacataatcctctgtcaatgt |
30946288 |
T |
|
| Q |
162 |
aattgttccattggggaagacttgagaaatcacaaaaggtctaaaccatcttgaatttaattttttaggaaatagttttagtttggagttacaaagtaag |
261 |
Q |
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|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |
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| T |
30946289 |
aattgttccattggagaagacttaagaaa--------ggtctaaaccatcttgaatttaattttctaggaaatagctttagtttggagttacagagtaag |
30946380 |
T |
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| Q |
262 |
actttctcccccacttggaattccttttttcgaatcttggcatcatgccatttcttaaccttggacttgtaaacttctgcattttcataagtaataagac |
361 |
Q |
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||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30946381 |
actttctcccctacttggaattcctttttttgaatattggcatcatgccatttattaaccttggacttgt-aacttctgcattttcataagtaataagac |
30946479 |
T |
|
| Q |
362 |
tattttcttctaattcatggagttacagcattttgcgactccca |
405 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30946480 |
tattttcttctaattcatggagttgcagcattttgcgactccca |
30946523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 385
Target Start/End: Original strand, 13208261 - 13208388
Alignment:
| Q |
258 |
taagactttctcccccacttggaattccttttttcgaatcttgg-catcatgccatttcttaaccttggacttgtaaacttctgcattttcataagtaat |
356 |
Q |
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||||||||||||||| ||||||||||| |||| ||||||| ||||||| ||||||||||| |||||||| |||| || |||||| || |||||||| |
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| T |
13208261 |
taagactttctcccc-acttggaattctcttttctgaatctttaacatcatgtcatttcttaactttggacttttaaatttgtgcattctcctaagtaat |
13208359 |
T |
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| Q |
357 |
aagactattttcttctaattcatggagtt |
385 |
Q |
| |
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||| |||| |||||||| |||||||||| |
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| T |
13208360 |
aagtctatgctcttctaactcatggagtt |
13208388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 17059535 - 17059500
Alignment:
| Q |
299 |
tggcatcatgccatttcttaaccttggacttgtaaa |
334 |
Q |
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||||||||||||| |||||||||||||||||||||| |
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| T |
17059535 |
tggcatcatgccacttcttaaccttggacttgtaaa |
17059500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 26280268 - 26280191
Alignment:
| Q |
11 |
cataggagggctagggaggttgattccaagtttgttgaagcttctccaaaatttatcgaccttctattgttggttatg |
88 |
Q |
| |
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|||||||||||||||||| |||||||||| ||| |||| |||| ||| ||| ||| ||||||| ||||| |||||| |
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| T |
26280268 |
cataggagggctagggagcttgattccaaattttttgatgctttgtcaacattcatcaaccttctcttgttagttatg |
26280191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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