View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3647_low_10 (Length: 315)
Name: NF3647_low_10
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 40577706 - 40577992
Alignment:
| Q |
20 |
taacgcgagtggcctatggttcttctggaggcgtattttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttga |
119 |
Q |
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| T |
40577706 |
taacgcgagtggcctatggttcttctggaggcgtattttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttgc |
40577805 |
T |
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| Q |
120 |
aaatggaaactacagcttgagacgatcagacctcatgttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaa |
219 |
Q |
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| T |
40577806 |
aaatggaaactacagcttgacacgatcagacctcatgttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaa |
40577905 |
T |
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| Q |
220 |
gctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
306 |
Q |
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| T |
40577906 |
gctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
40577992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 40571280 - 40571569
Alignment:
| Q |
20 |
taacgcgagtggcctatggttcttctggaggcgtattttacaatcaaagtgactcaaaagtacatgacttcaatccatgtggttattcttttttggttga |
119 |
Q |
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| T |
40571280 |
taacgcgagtgctctatggttcttatggaggcatattttacaatcaaagtcactcaaaagtacatgacttcaatccatgtggctatgcttttttgattga |
40571379 |
T |
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| Q |
120 |
aaatggaaactacagcttgagacgatcagacctcat---gttgatgaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctg |
216 |
Q |
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| T |
40571380 |
aaatggatcctacagcttaacacgatcagacctcctcaagttgaagaataaggagtttcctgtgttgttgaactggacagtaggaaaccaaacatgcctg |
40571479 |
T |
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| Q |
217 |
caagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
306 |
Q |
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| T |
40571480 |
caagctcagaagaatcttttcaattatgcatgtaaggccgagaaaagtacatgttacgatccaggaaccaacaaatctggttacctttgc |
40571569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 273
Target Start/End: Original strand, 40566643 - 40566840
Alignment:
| Q |
79 |
gtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagctt-gagacgatcagacctcat---gttgatgaagaaggagttt |
174 |
Q |
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| T |
40566643 |
gtacatgatttcaatccctgtggttattcttttgtggttgaaaatggagcctacagcttcgaatcca-cagacctccttgagttaaagaagaaggagttt |
40566741 |
T |
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| Q |
175 |
cctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttac |
273 |
Q |
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| T |
40566742 |
cctgtgttgttcgactgggcagtagggaaccaaacatgccagcatgctcagaatgatctttccaattatgcatgtaaggccagcaaaagtacatgttac |
40566840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 305
Target Start/End: Original strand, 40600663 - 40600887
Alignment:
| Q |
81 |
acatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagcttgagacgatcagacctcatgttgatgaagaaggagtttcctgtg |
180 |
Q |
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| T |
40600663 |
acatgacttccgttcatgtggttatgcttttgtggttgaatatggagcctacagcttcaattccacagacctcaagttgaataacaaggagtttcctgtg |
40600762 |
T |
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| Q |
181 |
ttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttacgaaacag |
280 |
Q |
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| T |
40600763 |
ttgttggactgggcagtagggaaccaaacttgtcatcaagctcagaaggatctttccacttatgcgtgtaaggccgacaaaagtacatgttacgatgcaa |
40600862 |
T |
|
| Q |
281 |
gaaccaacaaatctggttacctttg |
305 |
Q |
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||| ||| ||||||||||||||| |
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| T |
40600863 |
caactgacagatctggttacctttg |
40600887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 306
Target Start/End: Original strand, 40589702 - 40589849
Alignment:
| Q |
162 |
gaagaaggagtttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattc---caattatgcttgtaaggccatt |
258 |
Q |
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| T |
40589702 |
gaagaagaactttcctgtgttgttggactgggcagtaggaaaccaaacctgtcagcaagctcagaaggatctttcaagtaagtatgcttgtaaggcagac |
40589801 |
T |
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| Q |
259 |
aaaagtacatgttacgaaacaggaaccaacaaatctggttacctttgc |
306 |
Q |
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| T |
40589802 |
agaagtatatgttacgatgcagaaaccatcaaatctggttacctttgc |
40589849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 40596122 - 40596204
Alignment:
| Q |
172 |
tttcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggc |
254 |
Q |
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| T |
40596122 |
tttcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcggaaggatctttccacttatgcatgtaaggc |
40596204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 78 - 273
Target Start/End: Complemental strand, 2017032 - 2016834
Alignment:
| Q |
78 |
agtacatgacttcaatccatgtggttattcttttttggttgaaaatggaaactacagctt-gagacgatcagacctcat---gttgatgaagaaggagtt |
173 |
Q |
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|||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||| || || | | | |||||| | |||| ||||||||| || |
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| T |
2017032 |
agtacatgacttcaatccttgtggttatgctttttttgttgaaaatggagcctacactttcgaatcca-cggacctcctcaagttggagaagaaggaatt |
2016934 |
T |
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| Q |
174 |
tcctgtgttgttggactggaaagtaggaaatcaaacatgcctgcaagctcagaagaatcattccaattatgcttgtaaggccattaaaagtacatgttac |
273 |
Q |
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||||||||||||||||||| |||||| || ||||| |||| ||||||||||||| ||| | | |||||||| ||||||| || ||||||||||||||| |
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| T |
2016933 |
tcctgtgttgttggactgggcagtagggaaccaaacgtgccagcaagctcagaaggatcttgcaaattatgcctgtaaggacaacaaaagtacatgttac |
2016834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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