View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3647_low_11 (Length: 238)
Name: NF3647_low_11
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 37704492 - 37704716
Alignment:
| Q |
1 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704492 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
37704591 |
T |
|
| Q |
101 |
tttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37704592 |
tttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagataac |
37704691 |
T |
|
| Q |
201 |
aaattcatttaagtagcaatcacag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37704692 |
aaattcatttaagtagcaatcacag |
37704716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37699013 - 37699238
Alignment:
| Q |
1 |
gtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37699013 |
gtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaaaag |
37699112 |
T |
|
| Q |
101 |
tttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataaga |
196 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
37699113 |
tttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataataaga |
37699212 |
T |
|
| Q |
197 |
taacaaattcatttaagtagcaatca |
222 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
37699213 |
taacaaattcatttaagtagcaatca |
37699238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 37437584 - 37437778
Alignment:
| Q |
28 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
127 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
|
| Q |
128 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaagtagcaatca |
222 |
Q |
| |
|
|| ||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcatttaagtagcaatca |
37437778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 84 - 211
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
84 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
178 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
|
| Q |
179 |
tttcaagttgtgataagataacaaattcattta |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 16841109 - 16840970
Alignment:
| Q |
91 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
189 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
190 |
g------ataagataacaaattcatttaagtagcaatcaca |
224 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
16841010 |
gatattaataagataacaaattcatttaagtaccaatcaca |
16840970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University