View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3647_low_3 (Length: 431)
Name: NF3647_low_3
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 827355 - 827759
Alignment:
| Q |
17 |
aatcccaatcccataaagacaccaatacaaaatgcctgtccaatttctaaatgcctgtccaaacaaaagaaccaacaaacctcatttctaaatgcctgtc |
116 |
Q |
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| T |
827355 |
aatcccaatcccataaagacaccaatacaaaatgcctgtccaatttctaaatgcctgtccaaacaaaagaaccaacaaacctcatttctaaatgcctgtc |
827454 |
T |
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| Q |
117 |
caatttgtgcagcagcaaagggtagcttgtttccattgtaatagtacaagtctttgaaattaacaaatatgccctgtgcagtttctggacgcatgaacct |
216 |
Q |
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| T |
827455 |
caatttgtgcagcagcaaagggtagcttgtttccattgtaatagtacaagtctttgaaattaacaaatatgccctgtgcagtttctggacgcatgaacct |
827554 |
T |
|
| Q |
217 |
gtttcagttgaaaaaaggagttaaatgctttaccttactatgataataaaaattttaatacttcaggtgaaatagccatggattagaatttagagcattg |
316 |
Q |
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| T |
827555 |
gtttcagttgaaaaaaggagttaaatgctttaccttactatgataataaaaattttaatacttcaggtgaaatagccatggattagaatttagagcattg |
827654 |
T |
|
| Q |
317 |
taattgattgcatcaggtaaaaatcacatgaccaaaaacacaggaatcacttagatgtttatgattgcaaacgctactaatgcttgtgatataagagtgc |
416 |
Q |
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| T |
827655 |
taattgattgcaccaggtaaaaatcgcatgaccaaaaacacaggaatcacttagatgtttatgattgcaaacgctactaatgcttgtgatataagagtgc |
827754 |
T |
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| Q |
417 |
ctttg |
421 |
Q |
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| T |
827755 |
ctttg |
827759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 76 - 409
Target Start/End: Original strand, 833947 - 834276
Alignment:
| Q |
76 |
caaacaaaagaaccaacaaacctcatttctaaatgcctgtccaatttgtgcagcagcaaagggtagcttgtttccattgtaatagtacaagtctttgaaa |
175 |
Q |
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||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| ||||| |
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| T |
833947 |
caaacaaaa-aaccaacaaacctcgtttctaaaagcctgtccaatttgtgcagcagcaaagggtagcttgtctctattgtaatggtacaagtctctgaaa |
834045 |
T |
|
| Q |
176 |
ttaacaaatatgccctgtgcagtttctggacgcatgaacctgtttcagttgaaaaaaggagttaaatg----ctttacc--ttactatgataataaaaat |
269 |
Q |
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| T |
834046 |
ttaacaaatatgccctgtgcagtttctggacgcataaacctgttccagttg-aaaaaggaattaaatgtttaccttaccagttaccatgataatcaaatt |
834144 |
T |
|
| Q |
270 |
tttaatacttcaggtgaaatagccatggattagaatttagagcattgtaattgattgcatcaggtaaaaatcacatgaccaaaaacacaggaatcactta |
369 |
Q |
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| T |
834145 |
tttaatacttcaggtgaaatacccatgga-------ttagagcattgtaagtgaatgcaccaggtaaaaatcacatgacc-aaaatacaggaatcactta |
834236 |
T |
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| Q |
370 |
gatgtttatgattgcaaacgctactaatgcttgtgatata |
409 |
Q |
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|||||||| |||||||| |||||| ||| |||||||||| |
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| T |
834237 |
catgtttattattgcaaaggctactgatgattgtgatata |
834276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 940223 - 940370
Alignment:
| Q |
86 |
aaccaacaaacctcatttctaaatgcctgtccaatttgtgcagcagcaaagggtagcttgtttccattgtaatagtacaagtctttgaaattaacaaata |
185 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| |
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| T |
940223 |
aaccaacaaacctcatttctaaaagcctgcccaatttgtgcagcagcaaagggtagcttgtttccattgtaatagtacaaatccttgaaattaacgaata |
940322 |
T |
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| Q |
186 |
tgccctgtgcagtttctggacgcatgaacctgtttcagttgaaaaaag |
233 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
940323 |
tgccctgagcagtttctggacgcataaacctgtttcagttgaaaaaag |
940370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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