View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3647_low_4 (Length: 423)
Name: NF3647_low_4
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_4 |
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| [»] scaffold0038 (2 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 105 - 312
Target Start/End: Original strand, 28525484 - 28525691
Alignment:
| Q |
105 |
catcatcatacatatttgtatgatatggagctggaatattgtttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat |
204 |
Q |
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|||||| |||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28525484 |
catcatgatacatgtttgtatgatatgcagctggaatcttttttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat |
28525583 |
T |
|
| Q |
205 |
gtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataacatggatgatattcaattcaccaatccttatgaaaa |
304 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28525584 |
gtgaacatcagttagtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa |
28525683 |
T |
|
| Q |
305 |
gataaaat |
312 |
Q |
| |
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|||||||| |
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| T |
28525684 |
gataaaat |
28525691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 28246696 - 28246839
Alignment:
| Q |
172 |
tagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataacat |
271 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
28246696 |
tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat |
28246795 |
T |
|
| Q |
272 |
ggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28246796 |
ggatgatattcaattcaccaatccttatgaaaagataaaattaa |
28246839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 170 - 315
Target Start/End: Original strand, 28191730 - 28191875
Alignment:
| Q |
170 |
tttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataac |
269 |
Q |
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|||||||||||| ||||||||||||||| ||| || |||||||| | ||||||||| |||||||| ||||||||||||||| ||||||| |||||||| |
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| T |
28191730 |
tttagaaaatgaatggaatcatgcagaggttacatatgaacatccgagagtggaaccactaacagaaattggaatccattttttcaaacagaaaaataac |
28191829 |
T |
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| Q |
270 |
atggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
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||||||||||||||||||||| |||||||| ||| ||||||||||| |
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| T |
28191830 |
atggatgatattcaattcaccgatccttataaaaggataaaattaa |
28191875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 28328927 - 28329075
Alignment:
| Q |
167 |
ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaat |
266 |
Q |
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|
|||||||| |||||| |||| |||||||||| ||| ||| ||||||| || ||| |||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
28328927 |
ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat |
28329026 |
T |
|
| Q |
267 |
aacatggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
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|||||||| || ||| |||||||| ||||||||||||||||||| |||| |
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| T |
28329027 |
aacatggaggacattaaattcaccgatccttatgaaaagataaagttaa |
28329075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 167 - 315
Target Start/End: Original strand, 28506563 - 28506711
Alignment:
| Q |
167 |
ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaat |
266 |
Q |
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|
|||||||| |||||| |||| |||||||||| ||| ||| ||||||| || ||| |||||| |||||||||||||||||||||||| ||||||| ||||| |
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| T |
28506563 |
ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat |
28506662 |
T |
|
| Q |
267 |
aacatggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
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|||||||| || ||| |||||||| ||||||||||||||||||| |||| |
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| T |
28506663 |
aacatggaggacattaaattcaccgatccttatgaaaagataaagttaa |
28506711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 28239703 - 28239849
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataa |
268 |
Q |
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|
||||| ||||||| ||||||||||||||| |||||| ||||||| | ||||||||| |||||||| ||||||||||||||| |||||| ||||||| |
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| T |
28239703 |
ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa |
28239802 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | ||||||||| |
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| T |
28239803 |
catggatgacattcaattcaccaatccttaagaaaggttaaaattaa |
28239849 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
| Q |
107 |
tcatcatacatatttgtatgatatggagctggaat |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
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| T |
28328864 |
tcatcatacatatttgtatgatatgaagctggaat |
28328898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
| Q |
107 |
tcatcatacatatttgtatgatatggagctggaat |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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| T |
28506500 |
tcatcatacatatttgtatgatatgaagctggaat |
28506534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 46858 - 47001
Alignment:
| Q |
172 |
tagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataacat |
271 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
46858 |
tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat |
46957 |
T |
|
| Q |
272 |
ggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46958 |
ggatgatattcaattcaccaatccttatgaaaagataaaattaa |
47001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 39865 - 40011
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataa |
268 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| ||||||| | ||||||||| |||||||| ||||||||||||||| |||||| ||||||| |
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|
| T |
39865 |
ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa |
39964 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | ||||||||| |
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|
| T |
39965 |
catggatgacattcaattcaccaatccttaagaaaggttaaaattaa |
40011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 169 - 315
Target Start/End: Complemental strand, 55078 - 54932
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaatttggaatccatttttacaaacagcaaaataa |
268 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||| ||||||| ||||||| |
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|
| T |
55078 |
ttttagaaaatgaatggatccatgcagaggttacatgtgaacatccgaaggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataa |
54979 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaattaa |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54978 |
catggatgatattcaattcaccaatccttatgaaaagataaaattaa |
54932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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