View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3647_low_6 (Length: 402)
Name: NF3647_low_6
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_6 |
 | |
|
| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 105 - 315
Target Start/End: Original strand, 28525484 - 28525694
Alignment:
| Q |
105 |
catcatcatacatatttgtatgatatggagctggaatattgtttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat |
204 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28525484 |
catcatgatacatgtttgtatgatatgcagctggaatcttttttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat |
28525583 |
T |
|
| Q |
205 |
gtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa |
304 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28525584 |
gtgaacatcagttagtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa |
28525683 |
T |
|
| Q |
305 |
gataaaatcaa |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
28525684 |
gataaaatcaa |
28525694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 28246696 - 28246836
Alignment:
| Q |
172 |
tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat |
271 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
28246696 |
tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat |
28246795 |
T |
|
| Q |
272 |
ggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28246796 |
ggatgatattcaattcaccaatccttatgaaaagataaaat |
28246836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 170 - 312
Target Start/End: Original strand, 28191730 - 28191872
Alignment:
| Q |
170 |
tttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataac |
269 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| || |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28191730 |
tttagaaaatgaatggaatcatgcagaggttacatatgaacatccgagagtggaaccactaacagaaattggaatccattttttcaaacagaaaaataac |
28191829 |
T |
|
| Q |
270 |
atggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
28191830 |
atggatgatattcaattcaccgatccttataaaaggataaaat |
28191872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 28239703 - 28239846
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa |
268 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28239703 |
ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa |
28239802 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | |||||| |
|
|
| T |
28239803 |
catggatgacattcaattcaccaatccttaagaaaggttaaaat |
28239846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 28328927 - 28329070
Alignment:
| Q |
167 |
ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat |
266 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| ||| ||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28328927 |
ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat |
28329026 |
T |
|
| Q |
267 |
aacatggatgatattcaattcaccaatccttatgaaaagataaa |
310 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||||||||||||||| |
|
|
| T |
28329027 |
aacatggaggacattaaattcaccgatccttatgaaaagataaa |
28329070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 28506563 - 28506706
Alignment:
| Q |
167 |
ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat |
266 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| ||| ||||||| | ||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28506563 |
ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat |
28506662 |
T |
|
| Q |
267 |
aacatggatgatattcaattcaccaatccttatgaaaagataaa |
310 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||||||||||||||| |
|
|
| T |
28506663 |
aacatggaggacattaaattcaccgatccttatgaaaagataaa |
28506706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
| Q |
107 |
tcatcatacatatttgtatgatatggagctggaat |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28328864 |
tcatcatacatatttgtatgatatgaagctggaat |
28328898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
| Q |
107 |
tcatcatacatatttgtatgatatggagctggaat |
141 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28506500 |
tcatcatacatatttgtatgatatgaagctggaat |
28506534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 46858 - 46998
Alignment:
| Q |
172 |
tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat |
271 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||||| |
|
|
| T |
46858 |
tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat |
46957 |
T |
|
| Q |
272 |
ggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46958 |
ggatgatattcaattcaccaatccttatgaaaagataaaat |
46998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 39865 - 40008
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa |
268 |
Q |
| |
|
||||| ||||||| ||||||||||||||| |||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39865 |
ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa |
39964 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| | |||||| |
|
|
| T |
39965 |
catggatgacattcaattcaccaatccttaagaaaggttaaaat |
40008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 55078 - 54935
Alignment:
| Q |
169 |
ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa |
268 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55078 |
ttttagaaaatgaatggatccatgcagaggttacatgtgaacatccgaaggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataa |
54979 |
T |
|
| Q |
269 |
catggatgatattcaattcaccaatccttatgaaaagataaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54978 |
catggatgatattcaattcaccaatccttatgaaaagataaaat |
54935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University