View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3647_low_7 (Length: 394)
Name: NF3647_low_7
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3647_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 27984720 - 27984346
Alignment:
| Q |
1 |
attttaattttatcttgtattgatgtttgttattattcagcttcgatgttgctgctgtggtcactcttctgataaatttgagccattgatcgacatgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984720 |
attttaattttatcttgtattgatgtttgttattattcagcttcgatgttgctgctgtggtcactcttctgataaatttgagccattgatcgacatgagt |
27984621 |
T |
|
| Q |
101 |
ttagagatagaacatgtgagtaccattcagcaggctctggaatctttcaccaaggtagaaaagatggatggaaagtttatttgtagtgactgcaaccaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27984620 |
ttagagatagaacatgtgagtaccattcagcaggctctggaatctttcaccaaggtagaaaagatggatggaaagtttatttgtagtgactgcaaccaag |
27984521 |
T |
|
| Q |
201 |
aagtaactatggaaaaacagcttatgctttataaagctccttcagttgcagcatttcatttgaaaaggtttctaaaagatggagactcagttnnnnnnnt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27984520 |
aagtaactatggaaaaacagcttatgcttgataaagctccttcagttgcagcatttcatttgaaaaggtttctaaaagatggagactcagttaaaaaaat |
27984421 |
T |
|
| Q |
301 |
tgacaaatatgtcgatttctctaaggaactggacctgaagccttatacatatggtagtagcagtggtgacaatgt |
375 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27984420 |
tgataaatatgtcgatttctctaaggaactggacctgaagccttatacatgtggtagtagcagtggtgacaatgt |
27984346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 28042022 - 28041648
Alignment:
| Q |
1 |
attttaattttatcttgtattgatgtttgttattattcagcttcgatgttgctgctgtggtcactcttctgataaatttgagccattgatcgacatgagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28042022 |
attttaattttatcttgtattgatgtttgttattattcagcttcgatgttgctgctgtggtcactcttctgataaatttgagccattgatcgacatgagt |
28041923 |
T |
|
| Q |
101 |
ttagagatagaacatgtgagtaccattcagcaggctctggaatctttcaccaaggtagaaaagatggatggaaagtttatttgtagtgactgcaaccaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28041922 |
ttagagatagaacatgtgagtaccattcagcaggctctggaatctttcaccaaggtagaaaagatggatggaaagtttatttgtagtgactgcaaccaag |
28041823 |
T |
|
| Q |
201 |
aagtaactatggaaaaacagcttatgctttataaagctccttcagttgcagcatttcatttgaaaaggtttctaaaagatggagactcagttnnnnnnnt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28041822 |
aagtaactatggaaaaacagcttatgcttgataaagctccttcagttgcagcatttcatttgaaaaggtttctaaaagatggagactcagttaaaaaaat |
28041723 |
T |
|
| Q |
301 |
tgacaaatatgtcgatttctctaaggaactggacctgaagccttatacatatggtagtagcagtggtgacaatgt |
375 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28041722 |
tgataaatatgtcgatttctctaaggaactggacctgaagccttatacatgtggtagtagcagtggtgacaatgt |
28041648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 27239296 - 27239009
Alignment:
| Q |
1 |
attttaattttatcttgtattgatgtttgttattattcagcttcgatgttgctgctgt---ggtcactcttctgataaatttgagccattgatcgacatg |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||||| | || ||||| |||||| | |||||| |
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| T |
27239296 |
attttaattttatcttgtattgatgtttgttattactcagtttcgatgttgctgctgtcgtggttactcttcggctacatttgtgccatttaaggacatg |
27239197 |
T |
|
| Q |
98 |
agtttagagatagaacatgtgagtaccattcagcaggctctggaatctttcaccaaggtagaaaagatggatggaaagtttatttgtagtgactgcaacc |
197 |
Q |
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|||||||||||||||| || | | ||||| ||| |||||| ||||| |||||| ||||||| || ||| ||||||||||| || || ||||||||| |
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| T |
27239196 |
agtttagagatagaacttgcggcaagcattccgcatgctctgaaatctatcaccagggtagaacagctggctggaaagtttagatgcagcaactgcaacc |
27239097 |
T |
|
| Q |
198 |
aagaagtaactatggaaaaacagcttatgctttataaagctccttcagttgcagcatttcatttgaaaaggtttctaaaagatggaga |
285 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
27239096 |
aagaggtaactatggaaaaacagcttatgcttgataaagctccttcaattgcagtatttcatttgaaaaggtttctaaaagatggaga |
27239009 |
T |
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