View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3647_low_9 (Length: 328)

Name: NF3647_low_9
Description: NF3647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3647_low_9
NF3647_low_9
[»] chr1 (10 HSPs)
chr1 (1-323)||(28283437-28283759)
chr1 (115-211)||(17745219-17745314)
chr1 (115-209)||(44961785-44961879)
chr1 (137-211)||(52336758-52336832)
chr1 (115-208)||(16893415-16893508)
chr1 (115-209)||(42983336-42983430)
chr1 (118-187)||(40814373-40814442)
chr1 (115-211)||(6122812-6122908)
chr1 (115-211)||(6650613-6650709)
chr1 (122-186)||(12662325-12662389)
[»] chr4 (10 HSPs)
chr4 (115-209)||(21660106-21660200)
chr4 (115-209)||(21668870-21668964)
chr4 (115-211)||(13901760-13901856)
chr4 (137-211)||(15729501-15729574)
chr4 (115-211)||(37443720-37443813)
chr4 (115-173)||(47386753-47386811)
chr4 (115-168)||(7949416-7949469)
chr4 (118-211)||(13015445-13015538)
chr4 (115-208)||(33755984-33756077)
chr4 (115-211)||(8030166-8030262)
[»] chr3 (7 HSPs)
chr3 (115-209)||(2667882-2667976)
chr3 (115-187)||(52769945-52770017)
chr3 (115-209)||(14339630-14339724)
chr3 (115-209)||(36720401-36720495)
chr3 (123-209)||(32638965-32639051)
chr3 (115-208)||(51903840-51903933)
chr3 (137-209)||(26972433-26972505)
[»] chr2 (7 HSPs)
chr2 (115-190)||(33582012-33582087)
chr2 (115-211)||(3001397-3001493)
chr2 (115-209)||(8162027-8162121)
chr2 (115-205)||(31573603-31573693)
chr2 (115-187)||(35710433-35710505)
chr2 (115-208)||(19016052-19016145)
chr2 (115-211)||(28846709-28846805)
[»] chr7 (9 HSPs)
chr7 (115-209)||(48771958-48772052)
chr7 (115-179)||(41975937-41976001)
chr7 (115-209)||(43590927-43591021)
chr7 (149-211)||(45709704-45709766)
chr7 (115-208)||(25590632-25590725)
chr7 (154-211)||(39499720-39499777)
chr7 (115-203)||(5934147-5934235)
chr7 (115-211)||(24513815-24513911)
chr7 (115-211)||(34647603-34647698)
[»] chr8 (8 HSPs)
chr8 (115-209)||(40791857-40791951)
chr8 (115-209)||(8485019-8485113)
chr8 (138-211)||(19703472-19703545)
chr8 (117-161)||(3129828-3129872)
chr8 (115-183)||(7347883-7347951)
chr8 (115-207)||(11492035-11492127)
chr8 (115-211)||(11819794-11819890)
chr8 (115-211)||(16852358-16852454)
[»] chr5 (6 HSPs)
chr5 (137-206)||(11352006-11352075)
chr5 (115-212)||(22020824-22020921)
chr5 (115-211)||(29075799-29075895)
chr5 (115-187)||(29173532-29173604)
chr5 (137-211)||(21549121-21549195)
chr5 (147-209)||(36958116-36958178)
[»] scaffold0118 (1 HSPs)
scaffold0118 (115-211)||(41595-41691)
[»] scaffold0008 (1 HSPs)
scaffold0008 (115-207)||(49328-49420)
[»] chr6 (8 HSPs)
chr6 (115-211)||(3715470-3715566)
chr6 (115-205)||(12633033-12633123)
chr6 (115-209)||(21418490-21418584)
chr6 (115-208)||(1992209-1992301)
chr6 (154-203)||(10322694-10322743)
chr6 (115-187)||(20213083-20213155)
chr6 (115-187)||(22107106-22107178)
chr6 (117-209)||(30127420-30127512)
[»] scaffold0074 (1 HSPs)
scaffold0074 (136-187)||(45742-45793)
[»] scaffold0032 (1 HSPs)
scaffold0032 (115-206)||(112305-112396)
[»] scaffold0126 (1 HSPs)
scaffold0126 (137-211)||(25331-25405)
[»] scaffold0299 (1 HSPs)
scaffold0299 (137-209)||(11548-11620)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 28283759 - 28283437
Alignment:
Q  1 cttcctattcttactatatgatcgtaattactaaaatcggagatactaattaaaaattaaggggttccatatgtggctcaatgtagacaaggtagttatg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  28283759 cttcctattcttactatatgatcgtaattactaaaattggagatactaattaaaaattaaggggttccatatgtgactcaatgtagagaaggtagttatg 28283660  T
Q  101 ttatggnnnnnnnnaagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagc 200  Q
    ||||||        |||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||| || ||||||||||||| |||||||||    
T  28283659 ttatggttttttttaagaagttaaattagactacataaattgacaccagagagaatcgaacctgagacatcaaggaagaacacactctcaaatctcaagc 28283560  T
Q  201 caataccactatagttatgttatggttatcaagttttacctagtccacaagatggataaaaaggacaaattgatcacttttttatttaatcctcgattca 300  Q
     ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28283559 taataccactgtagttatgttatggttatcaagctttacctagtccacaagatggataaaaaggacaaattgatcacttttttatttaatcctcgattca 28283460  T
Q  301 tatttctccaaccctttgcttct 323  Q
    |||||||||||||||||| ||||    
T  28283459 tatttctccaaccctttgtttct 28283437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 17745219 - 17745314
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||||||| || || ||||||||||| ||||| |||||||| |||||| || | ||||| ||||| ||||  || ||||||||||||||||    
T  17745219 aagaagctaaatta-accacctaaattgacaccagagagaatcgaacatgagacctcgaggaggagcacacgctcaggtcccaagccaataccacta 17745314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 44961879 - 44961785
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | ||  |||||||||||||||| |||||||| ||||||    | ||||| |||||||| | ||||||||| ||||||||    
T  44961879 aagaagctaaattagcccacccaaattgacactagagagaatcgaacctgagaccctgaggaggagcacactcttaaatctcaagctaataccac 44961785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 52336758 - 52336832
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||| |||||||||||||| |||||  | || ||||| ||||||| || ||| ||||||||||||||||    
T  52336758 aaattgacaccagagataatcgaacctgagatcttaaggaggagcacactcccagatcccaagccaataccacta 52336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 16893508 - 16893415
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    ||||||||||||||| | ||  ||||||||||  |||| |||||||| |||||| || | |||||  |||||| || |||||||||||||||||    
T  16893508 aagaagctaaattagcccactcaaattgacaccggagaaaatcgaacctgagacctcgaggaggagtacactcccaaatctcaagccaatacca 16893415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 42983336 - 42983430
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || ||||||| |||  |||| |||||||| |  ||| |||| ||||| ||||||| || |||||||| |||||||||    
T  42983336 aagaagctaaattagtccacttaaattggcacctgagagaatcgaacctcggacctcaaggaggaccacactcccagatctcaagtcaataccac 42983430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 40814373 - 40814442
Alignment:
Q  118 aagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    |||||||||||| | || ||||||||||||||||| |||||||| ||| || |||| || || |||||||    
T  40814373 aagctaaattagcccacttaaattgacactagagagaatcgaacctgaaacctcaaggatgagcacactc 40814442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 6122908 - 6122812
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||||| | ||  |||||||||||||||  |||||||| |||||| |  | ||||| ||||||| ||  || |||||| |||||||||    
T  6122908 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccacta 6122812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 6650709 - 6650613
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||| ||  | || ||||||||||| ||||| |||||||| ||||||||  | ||||| || |||| |  ||| ||||||||||||||||    
T  6650709 aagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcatactccccgatcccaagccaataccacta 6650613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 12662389 - 12662325
Alignment:
Q  122 taaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacact 186  Q
    |||||||| | || ||||||| || ||||||||||||||| ||||||||| | ||||| ||||||    
T  12662389 taaattagtccacctaaattggcattagagataatcgaacctgagacatcgaggaggagcacact 12662325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 21660106 - 21660200
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| |||||| || | || || ||||||| || |||||||| |||||||||    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccac 21660200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 21668870 - 21668964
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||| |||||| || | || || ||||||| || |||||||| |||||||||    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacactcccagatctcaagtcaataccac 21668964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 13901856 - 13901760
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||||  | || |||||| ||| |||| | ||| |||| |||||| |||| ||||||||||||| ||  |||||||||||||||||||    
T  13901856 aagaagctaaattaacccacctaaattaacattagatagaattgaacttgagacctcaaggaggaacacactcccaggtctcaagccaataccacta 13901760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 15729574 - 15729501
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||  | || |||||||| ||||||||| | ||||| |||||||||| ||||||| ||||||||||||    
T  15729574 aaattgacaccggtgagaatcgaacttgagacatcgaggaggagcacactctca-atctcaaaccaataccacta 15729501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 37443813 - 37443720
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||| ||||||||| | |||||||||| ||| |||||||||||||| ||| || ||   |||||  |||||| || ||| ||||||||||||||||    
T  37443813 aagaaactaaattagcccacataaattggcaccagagataatcgaacatgaaacctc---gaggagtacactcccagatcccaagccaataccacta 37443720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 47386753 - 47386811
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaa 173  Q
    ||||||||||||||| | || ||||||||||||||||| ||| |||| |||||| ||||    
T  47386753 aagaagctaaattagcccacctaaattgacactagagagaattgaacctgagacctcaa 47386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 7949416 - 7949469
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagac 168  Q
    ||||||||||||||| | || ||||||||||| ||||| |||||||| ||||||    
T  7949416 aagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagac 7949469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 13015538 - 13015445
Alignment:
Q  118 aagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||||  | || |||||||||||  |||| |||||||| |||||| || | ||||| ||||||| ||  || ||||||||||||||||    
T  13015538 aagctaaattaacccacctaaattgacacctgagagaatcgaacatgagacttcgaggaggagcacactcccaagtcccaagccaataccacta 13015445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 33756077 - 33755984
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    |||||| |||||||| | || |||||||| | |||||||||| |||| |||||| ||||| |||| ||||||  ||  ||||||||||| ||||    
T  33756077 aagaagttaaattagtccacctaaattgatattagagataattgaacttgagacctcaaacaggagcacactaccaagtctcaagccaacacca 33755984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 8030166 - 8030262
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||||| | ||  |||||||||||||||  |||||||| |||||| |  | ||||| ||||||| ||  || |||||| |||||||||    
T  8030166 aagaagctaaattagcccacccaaattgacactagagggaatcgaacttgagaccttgaggaggagcacactcccaagtcccaagcctataccacta 8030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 2667976 - 2667882
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||| ||| | || |||||||||||||||||||||||||| |||||| || | || || ||||||| || ||| ||||||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacactcccagatcccaagccaataccac 2667882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 52769945 - 52770017
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    ||||||||||||||| | || ||||||||||||| ||| |||||||| |||||| |||| ||||| |||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaacctgagacctcaaggaggagcacactc 52770017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 14339724 - 14339630
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || | ||||| |||||| || |||||||| ||||||||  | ||||| ||||||| || ||| ||||||||||||||    
T  14339724 aagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaaatcccaagccaataccac 14339630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 36720495 - 36720401
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    |||||||||||  || | || ||||||||||||||||| |||||||| ||| || || | ||||| ||||||| || ||| ||||||||||||||    
T  36720495 aagaagctaaaccagcccacctaaattgacactagagagaatcgaacctgaaacctcgaggaggagcacactcccatatcccaagccaataccac 36720401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 32639051 - 32638965
Alignment:
Q  123 aaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||| | || |||||||||||| |||| |||||||| |||||| || |||| |||||||||| ||  |  ||||||||||||||    
T  32639051 aaattaggccacttaaattgacactggagaaaatcgaacctgagacctcgaagatgaacacactcccagtttccaagccaataccac 32638965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 51903840 - 51903933
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    ||||||||||||||| | ||  ||||||||||  |||| |||||||| ||||||  | | ||||| ||||||| || ||| |||||||||||||    
T  51903840 aagaagctaaattagcccactcaaattgacaccggagagaatcgaacctgagaccacgaggaggagcacactcccagatcccaagccaatacca 51903933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 26972433 - 26972505
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||| |||  |||||||| ||||||||| || | || ||||||||||  |||| ||||||||||||    
T  26972433 aaattgacactggagggaatcgaacctgagacatcgaaaatgaccacactctcaagtctccagccaataccac 26972505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 33582087 - 33582012
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctca 190  Q
    ||||||||||||||| | || |||||||||| |||||| |||||||| |||||| |||| ||||| ||||||||||    
T  33582087 aagaagctaaattagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctca 33582012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 3001493 - 3001397
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||| ||||||||| | ||||||| || ||| |||||||||||||| |||||  |||| ||||| |||||||  | |||||||| |||||||||||    
T  3001493 aagaacctaaattagcccacataaactggcaccagagataatcgaacctgagatctcaaggaggagcacactcctagatctcaagtcaataccacta 3001397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 8162027 - 8162121
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    |||||||||||||||   || |||||||||||| |||| |||| ||| |||||| |||| |||||||||| |||||  || ||||| ||||||||    
T  8162027 aagaagctaaattagttcacttaaattgacactggagagaatccaacttgagacctcaaggaggaacacattctcaggtcccaagctaataccac 8162121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 31573603 - 31573693
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaata 205  Q
    |||||| |||||||| | || ||||||||||    ||| |||||||| ||||||||||| ||||| |||||||||| ||||||| ||||||    
T  31573603 aagaagttaaattagtccacctaaattgacatcgaagagaatcgaacctgagacatcaaggaggagcacactctcagatctcaaaccaata 31573693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 35710505 - 35710433
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    |||||| |||| ||| | || |||||||| |||| ||| |||||||| |||||| ||||||||||||||||||    
T  35710505 aagaagttaaactagccaacctaaattgatactacagagaatcgaacatgagacctcaaagaggaacacactc 35710433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 19016145 - 19016052
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    ||||||||||||||| |||| ||||||| |||  | || |||| ||| |||||| || | ||||| ||||||| ||  ||||||||||||||||    
T  19016145 aagaagctaaattagcctacttaaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaatacca 19016052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 28846805 - 28846709
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||| |||||||| ||||  |||||||||   | ||||||||||| ||||||||| | ||||| ||||||| ||  || |||| |||||||||||    
T  28846805 aagaagttaaattagtctacccaaattgacatcggtgataatcgaacctgagacatcgaggaggagcacactcccaggtcccaagtcaataccacta 28846709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 48772052 - 48771958
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || |||||||  ||| | ||||||||||| |||||| |||| ||||| ||||||| || ||| ||||||||||||||    
T  48772052 aagaagctaaattagcccacctaaattggtacttgggataatcgaacctgagacctcaaggaggagcacactcccagatcccaagccaataccac 48771958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 179
Target Start/End: Complemental strand, 41976001 - 41975937
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagagga 179  Q
    ||||||||||||||| | || ||||||||||||||||| |||||||| |||||| |||| |||||    
T  41976001 aagaagctaaattagcccacttaaattgacactagagagaatcgaacttgagacctcaatgagga 41975937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 43591021 - 43590927
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || | ||||| |||||| || |||||||| ||||||||  | ||||| ||||||| ||  || ||||||||||||||    
T  43591021 aagaagctaaattagcccaccttaattggcactagggagaatcgaacctgagacattgaggaggagcacactcccaagtcccaagccaataccac 43590927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 45709704 - 45709766
Alignment:
Q  149 gagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||| |||||| || | ||||| |||||||||| ||| ||||| ||||||||||    
T  45709704 gagataatcgaacctgagacctcgaggaggagcacactctcagatcccaagctaataccacta 45709766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 25590725 - 25590632
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    ||||||||||||||| | ||  ||||||||||   ||| ||||||||  ||||| || | ||||| ||||||| || |||||||||||||||||    
T  25590725 aagaagctaaattagcccactcaaattgacaccgaagaaaatcgaacccgagacctcgaggaggagcacactcccagatctcaagccaatacca 25590632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 39499720 - 39499777
Alignment:
Q  154 aatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||| |||||| | |||||||||||||||| ||  || ||||||||||||||||    
T  39499720 aatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccacta 39499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 5934235 - 5934147
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaa 203  Q
    ||||| ||||||||| | || ||||||||||| ||||  |||||||| ||| || |||| ||||| ||||||| || ||| ||||||||    
T  5934235 aagaaactaaattagtccacctaaattgacaccagagggaatcgaacatgaaacctcaaggaggagcacactcccagatcccaagccaa 5934147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 24513911 - 24513815
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||| |||||||| | ||  |||||||||  || || |||||||| |||||| |||| ||| |  |||||| || ||||||||||||||||||||    
T  24513911 aagaagttaaattagcccacccaaattgacatcagtgaaaatcgaacctgagacctcaaggagaagtacactcccaaatctcaagccaataccacta 24513815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 34647603 - 34647698
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||| |||||||||| |  ||||||||||| | ||| |||| ||  | ||| |||||||||||||| |||| || |||||||| |||||||||||    
T  34647603 aagaagttaaattagaccatttaaattgacacaaaagagaatcaaatctaaga-atcaaagaggaacatactcacagatctcaagtcaataccacta 34647698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 40791857 - 40791951
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || ||||||||||||||||| |||||||| | |||| |||| ||||| |||| ||| |  || || |||||||||||    
T  40791857 aagaagctaaattagcccacttaaattgacactagagaaaatcgaacctaagacttcaaggaggagcacattctgaggtcccaggccaataccac 40791951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 8485113 - 8485019
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || ||||||| |||  |||| |||||||  |||||| |||||||||| ||||||| ||  || ||||| ||||||||    
T  8485113 aagaagctaaattagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccac 8485019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 19703472 - 19703545
Alignment:
Q  138 aattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||||| || |||||||| |||||| |  | ||||| ||||||||||  || ||||||||||||||||    
T  19703472 aattgacactagggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccacta 19703545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 3129828 - 3129872
Alignment:
Q  117 gaagctaaattagactacataaattgacactagagataatcgaac 161  Q
    ||||||||||||| | || ||||||||||||||||| ||||||||    
T  3129828 gaagctaaattagcccacttaaattgacactagagagaatcgaac 3129872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 7347951 - 7347883
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacac 183  Q
    ||||||||||||||| | || ||||||||||| ||||| ||| |||| ||| || |||| |||||||||    
T  7347951 aagaagctaaattagcccacctaaattgacacaagagagaattgaacctgaaacctcaaggaggaacac 7347883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 11492035 - 11492127
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacc 207  Q
    ||||||||||||||| | ||  |||||||||||  ||| |||||||| | |||| || |  |||| ||||||| || ||||||||||||||||    
T  11492035 aagaagctaaattagcccacccaaattgacactgaagagaatcgaacctaagacctcgagaaggagcacactcccagatctcaagccaatacc 11492127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 11819890 - 11819794
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||||| | ||  |||||||||||||||  |||||||| |||||| |  | ||||| ||||||| ||  || |||||| |||||||||    
T  11819890 aagaagctaaattagcccacccaaattgacactagagtgaatcgaacctgagaccttgaggaggagcacactcccaagtcccaagcctataccacta 11819794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 16852454 - 16852358
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||| ||| | || ||||||| |||||  || |||||||| |||||| || | ||||| ||||||| ||  || ||||||||||||||||    
T  16852454 aagaagctaaaatagcccacctaaattggcactaaggagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccacta 16852358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 11352075 - 11352006
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatac 206  Q
    ||||||||||| |||| |||||||| ||||||||  | ||| |||||||||||| || ||||||||||||    
T  11352075 aaattgacactggagagaatcgaacttgagacattgaggagaaacacactctcatatttcaagccaatac 11352006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 212
Target Start/End: Original strand, 22020824 - 22020921
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccactat 212  Q
    ||||| ||||||||| | || |||||| ||||| |||| |||||||  |||||| |||| ||||| ||||||| || ||| ||||| |||||||||||    
T  22020824 aagaaactaaattagcccacctaaattaacactggagagaatcgaatctgagacttcaaggaggagcacactcccagatcccaagctaataccactat 22020921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 29075895 - 29075799
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    ||||||||||||||| | |  ||||||| ||| ||||| |||||||| |||||  || | ||||| ||||||| || ||| ||||||||||||||||    
T  29075895 aagaagctaaattagcccatctaaattggcaccagagagaatcgaacatgagatctcgaggaggagcacactcccagatcccaagccaataccacta 29075799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 29173604 - 29173532
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    ||||||||||||||| | || ||||||||||| |||||||||||||| ||| || || | ||||| |||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacactc 29173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 21549121 - 21549195
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||| ||||||||| |||||||| |||||| | || ||||| ||||||| ||  || ||||||||||||||||    
T  21549121 aaattggcactagagaaaatcgaacttgagactttaaggaggagcacactcccaggtcccaagccaataccacta 21549195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 36958116 - 36958178
Alignment:
Q  147 tagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    |||||| |||||||| |||||| || | ||||||||||||| || ||||||||||||| ||||    
T  36958116 tagagagaatcgaacctgagacttcgatgaggaacacactcccaaatctcaagccaatcccac 36958178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 41595 - 41691
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||| |||||||||| | ||  |||||||||  ||||| ||| |||| |||||| || | ||||| || ||||||| ||||||||||||||||||||    
T  41595 aagaggctaaattagcccacccaaattgacatcagagagaattgaacctgagacctcgaggaggagcatactctcagatctcaagccaataccacta 41691  T

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Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 49420 - 49328
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacc 207  Q
    |||||| |||||||  | || |||||||||||  |||| |||||||| ||| || || ||||||| |||||||||| ||| ||||||||||||    
T  49420 aagaagttaaattaacccacttaaattgacaccggagagaatcgaacctgatacctcgaagaggagcacactctcaaatcccaagccaatacc 49328  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 3715566 - 3715470
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||||| || | || |||||||||||| |||| |||||||| |||||| || | ||| | || |||| || |||||||| |||||||||||    
T  3715566 aagaagctaaatcagcccacctaaattgacactggagagaatcgaacttgagacctcgacgagaagcatactcccagatctcaagtcaataccacta 3715470  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 12633123 - 12633033
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaata 205  Q
    ||||||||||||||| | || |||||||||| | |||| |||||||| |||||  || ||||||| ||||||| || ||| |||| |||||    
T  12633123 aagaagctaaattagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaagtcaata 12633033  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 21418584 - 21418490
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||||| | || | ||||| |||||| || |||||||| ||||||||  | ||||| ||||||| ||  || ||||||||||||||    
T  21418584 aagaagctaaattagcccaccttaattggcactagggagaatcgaacttgagacatggaggaggagcacactcccaagtcccaagccaataccac 21418490  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 1992209 - 1992301
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatacca 208  Q
    |||||||||||||||   || ||||||||||||||||| |||||||| | |||  || |||| |||||||||| || ||| ||| |||||||||    
T  1992209 aagaagctaaattagcacacctaaattgacactagagagaatcgaacataagatttcgaagaagaacacactcccagatc-caaaccaatacca 1992301  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 10322743 - 10322694
Alignment:
Q  154 aatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaa 203  Q
    |||||||| ||| || ||||||||||||||||||| | ||||||||||||    
T  10322743 aatcgaacatgaaacttcaaagaggaacacactcttaaatctcaagccaa 10322694  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 20213155 - 20213083
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    ||||||||||||||| | ||  |||||||||||||||  |||||||| ||||||||  | ||||| |||||||    
T  20213155 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 20213083  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 22107178 - 22107106
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    ||||||||||||||| | ||  |||||||||||||||  |||||||| ||||||||  | ||||| |||||||    
T  22107178 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacactc 22107106  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 30127512 - 30127420
Alignment:
Q  117 gaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||||||||||  |||| ||||||| |||  || | |||||||| |||||| || ||||||| ||||||| || | | ||||||||||||||    
T  30127512 gaagctaaattaacctacctaaattggcaccggaaagaatcgaacctgagacctcgaagaggagcacactcccagaccccaagccaataccac 30127420  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 45742 - 45793
Alignment:
Q  136 taaattgacactagagataatcgaacgtgagacatcaaagaggaacacactc 187  Q
    ||||||||||| ||||| |||||||| |||||| |||| |||||||||||||    
T  45742 taaattgacaccagagagaatcgaacatgagacctcaaggaggaacacactc 45793  T

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Target: scaffold0032 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 112396 - 112305
Alignment:
Q  115 aagaagctaaattagactacataaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaatac 206  Q
    ||||||||||||||| | || ||||||| |||  |||| |||||||| | |||| |||||||||| ||||||| || ||  |||||||||||    
T  112396 aagaagctaaattagtccacctaaattggcaccggagagaatcgaacctcagacctcaaagaggaccacactcccagattccaagccaatac 112305  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 25331 - 25405
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccacta 211  Q
    |||||||||| |||||||||||||| |||||| |  |  |||| ||||||| ||  |||||||||||||||||||    
T  25331 aaattgacaccagagataatcgaacctgagaccttgagaaggagcacactcccaagtctcaagccaataccacta 25405  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 11620 - 11548
Alignment:
Q  137 aaattgacactagagataatcgaacgtgagacatcaaagaggaacacactctcacatctcaagccaataccac 209  Q
    ||||| |||| ||||| |||||||| |||||| || | ||||| ||||||| || ||| ||||||||||||||    
T  11620 aaattaacaccagagagaatcgaacctgagacctcgaggaggagcacactcccagatcccaagccaataccac 11548  T

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