View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3648_high_10 (Length: 424)
Name: NF3648_high_10
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_10 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 14588665 - 14588261
Alignment:
| Q |
7 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaaggttcgagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
14588665 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaagttccgagc |
14588566 |
T |
|
| Q |
107 |
tgcacctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaa |
206 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588565 |
tgcgcctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaa |
14588466 |
T |
|
| Q |
207 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaacggaacattctgagtgctttcagcacctt |
306 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14588465 |
gttttgaatatctcagtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
14588366 |
T |
|
| Q |
307 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14588365 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtt |
14588266 |
T |
|
| Q |
407 |
tatga |
411 |
Q |
| |
|
||||| |
|
|
| T |
14588265 |
tatga |
14588261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 411
Target Start/End: Complemental strand, 14622323 - 14621919
Alignment:
| Q |
7 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaaggttcgagc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||| |
|
|
| T |
14622323 |
tgagatgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaacccaagttccaagc |
14622224 |
T |
|
| Q |
107 |
tgcacctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaa |
206 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14622223 |
tgcggctacgctgtaatacgcacaaggaatgttgaaactcttggttatcgacggtaaccaatccgatactacatcacagaaaacccaatcaggcttcgaa |
14622124 |
T |
|
| Q |
207 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaacggaacattctgagtgctttcagcacctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14622123 |
gttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaaccagttaggtttaacggaacattttgagtgctttctgcacctt |
14622024 |
T |
|
| Q |
307 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14622023 |
gtagttcttctatgtatggtaaaggtgattttaccaacttgatgaatggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtt |
14621924 |
T |
|
| Q |
407 |
tatga |
411 |
Q |
| |
|
||||| |
|
|
| T |
14621923 |
tatga |
14621919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 260
Target Start/End: Complemental strand, 12846083 - 12845949
Alignment:
| Q |
126 |
gcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
225 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || |||||||| || | | |||||| |||||||||| ||||| || || |||||||||||||| |||| |
|
|
| T |
12846083 |
gcacaagggatgttcaaacttttggctattgacggtaaccattcggtagcaaaatcatagaaaacccagtcagggtttgatgttttgagtatctcagtaa |
12845984 |
T |
|
| Q |
226 |
cacggtcttggaaaccatcataagctaacttaagg |
260 |
Q |
| |
|
|| ||||||| |||||||||||| ||||||||| |
|
|
| T |
12845983 |
catcatcttggagaccatcataagccaacttaagg |
12845949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 11 - 409
Target Start/End: Complemental strand, 11530203 - 11529805
Alignment:
| Q |
11 |
atgaatggttgtttggaaaggaacccattttggtggactatacaagtctatgtcggttcgttcccctggtggattaaagaaaaccaaggttcgagctgca |
110 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| |||||| |||||||| | || | ||| |||||||||||||||| | | | | ||||| | |
|
|
| T |
11530203 |
atgaatggttgtttcgaaaggaacccactttggtgggctatacctgtctatgttgatttgatcctttggtggattaaagaaacatatgttccaagctgga |
11530104 |
T |
|
| Q |
111 |
cctatgctgtaatacgcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaagttt |
210 |
Q |
| |
|
| |||||||||| ||||||||||| || | || ||||||||||| ||||||||||| | ||| ||||| ||||||||||||||| ||| || |||| |
|
|
| T |
11530103 |
acaatgctgtaatgggcacaaggaatattcaggcttttggctatcgacggtaaccaatcagctacacaatcatagaaaacccaatcagactttgatgttt |
11530004 |
T |
|
| Q |
211 |
tgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaacggaacattctgagtgctttcagcaccttgtag |
310 |
Q |
| |
|
|||||||||| |||||| | |||||| ||| |||||||| ||||||||||||| ||| |||||| |||||||| |||||||| || ||||||| ||| |
|
|
| T |
11530003 |
tgagtatctcagtaacatcgacttggagaccgtcataagccaacttaaggtaaccagtcttgtttaatggaacattttgagtgctctctgcaccttctag |
11529904 |
T |
|
| Q |
311 |
ttcttctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttat |
409 |
Q |
| |
|
|| |||||||| ||||| ||| |||||||||| |||||||| || |||| || ||| ||||||||||| |||||||||||||||||||| ||| |||| |
|
|
| T |
11529903 |
ttgttctatgtggggtaagggtaattttaccaaattgatgaatggctgaattgcttttggtgttttgggaatttgatcaatgtttttaggagaggttat |
11529805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 179 - 411
Target Start/End: Complemental strand, 20492205 - 20491973
Alignment:
| Q |
179 |
atcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaac |
278 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||||| |||||||||||||| || ||||||| || | | || ||| |
|
|
| T |
20492205 |
atcatagaaaacccaatcaggctttgaagttttaagtatttcagtaacatggtcttgaaaaccatcataagccaatttaaggtgaccattcttgtctaat |
20492106 |
T |
|
| Q |
279 |
ggaacattctgagtgctttcagcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgg |
378 |
Q |
| |
|
||||| || ||||||| || |||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||| ||||| |
|
|
| T |
20492105 |
ggaaccttaagagtgctctcttcaccatgtagttgttctatgtatggtaaaggtgattttaccaaattgatgaatggttgaattgctttgggtgctttgg |
20492006 |
T |
|
| Q |
379 |
gcatttgatcaatgtttttaggggagtttatga |
411 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
20492005 |
gcatttgatcaatgtttttgggggagtttatga |
20491973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 1354383 - 1354287
Alignment:
| Q |
315 |
tctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatga |
411 |
Q |
| |
|
||||||| ||||||||| || ||||||| |||||||| |||| || |||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
1354383 |
tctatgtgtggtaaaggcaatcttaccaatttgatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatga |
1354287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 1361269 - 1361173
Alignment:
| Q |
315 |
tctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatgtttttaggggagtttatga |
411 |
Q |
| |
|
||||||| ||||||||| || ||||||| || ||||| |||| || |||||||||||||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
1361269 |
tctatgtgtggtaaaggcaatcttaccaatttaatgaatggttcaatggttttgggtgtttttggcatttggtcaatgtttttaggggagttgatga |
1361173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 1361595 - 1361556
Alignment:
| Q |
7 |
tgagatgaatggttgtttggaaaggaacccattttggtgg |
46 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1361595 |
tgagatgaatggttgtttgaaaaggaacccattttggtgg |
1361556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 1357293 - 1357250
Alignment:
| Q |
177 |
aaatcacagaaaacccaatcaggcttcgaagttttgagtatctc |
220 |
Q |
| |
|
|||||| |||||||||||||||| || ||||||||||||||||| |
|
|
| T |
1357293 |
aaatcatagaaaacccaatcaggatttgaagttttgagtatctc |
1357250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 20492373 - 20492331
Alignment:
| Q |
11 |
atgaatggttgtttggaaaggaacccattttggtggactatac |
53 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
20492373 |
atgaatgtttgttttgaaaggaacccactttggtggactatac |
20492331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 126 - 392
Target Start/End: Complemental strand, 29954123 - 29953857
Alignment:
| Q |
126 |
gcacaaggaatgttgaaactcttggctatcgatggtaaccaatccgatactaaatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaa |
225 |
Q |
| |
|
|||||||||||||||| || || ||||| || ||||||||||| | | | ||||| | ||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
29954123 |
gcacaaggaatgttgaggcttttcgctattgacggtaaccaatcagctgcataatcatataaaacccaatcaggctttgaagttttgagtatctcagtaa |
29954024 |
T |
|
| Q |
226 |
cacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaacggaacattctgagtgctttcagcaccttgtagttcttctatgtatgg |
325 |
Q |
| |
|
|| |||||||| ||| |||||||| || ||||| |||| | | ||| || |||||||| |||||||| || |||||||||||| |||||||||||| |
|
|
| T |
29954023 |
catcgtcttggagaccgtcataagccaatttaagataaccaagcatgttaaatggaacattttgagtgctctctccaccttgtagttgttctatgtatgg |
29953924 |
T |
|
| Q |
326 |
taaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttgggcatttgatcaatg |
392 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| ||||||||||| ||| || |||||||||||| |
|
|
| T |
29953923 |
taaaggtgattttaccaaattgatgaatggttgaattgttttgggtggtttcggaatttgatcaatg |
29953857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 406
Target Start/End: Original strand, 51370382 - 51370610
Alignment:
| Q |
178 |
aatcacagaaaacccaatcaggcttcgaagttttgagtatctcggtaacacggtcttggaaaccatcataagctaacttaaggtaactagttaggtttaa |
277 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| || |||||| |||||| | ||| |||||||| |||||||| |||| | | | |||| |
|
|
| T |
51370382 |
aatcatagaaaacccaatcaggctttgaagttttgagtatatcagtaacattgtcttgtagaccgtcataagccaacttaagataaccaatcatgttttt |
51370481 |
T |
|
| Q |
278 |
cggaacattctgagtgctttcagcaccttgtagttcttctatgtatggtaaaggtgattttaccaacttgatgaagggttgaagtgttttgggtgttttg |
377 |
Q |
| |
|
|||| |||||| |||| || |||||||||||| |||||| | ||||||||||||||| ||||| |||||||| ||||||| ||||||||||| ||| |
|
|
| T |
51370482 |
tggaatattctgcatgctctcttcaccttgtagttgttctatatgtggtaaaggtgatttaaccaaattgatgaatggttgaattgttttgggtggttta |
51370581 |
T |
|
| Q |
378 |
ggcatttgatcaatgtttttaggggagtt |
406 |
Q |
| |
|
|| ||||||||||||||||| || ||||| |
|
|
| T |
51370582 |
ggaatttgatcaatgtttttgggagagtt |
51370610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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