View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_13 (Length: 406)
Name: NF3648_high_13
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 9607872 - 9608245
Alignment:
| Q |
20 |
aatagggtttaaaatagggttttaaagttttaaagtatacatgatattaacaaatatattgattccattggttttgttaatattttgcaggagctactat |
119 |
Q |
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| T |
9607872 |
aatagggtttaaaatagggttttaaagttttaaagtatacatgatattaacaaatatattgattccattggttttgttaatattttgcaggagctactat |
9607971 |
T |
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| Q |
120 |
aggtgcacacatcaagggtgcaatgtaaagaaacaagtgcaacggttaaccaaagatgagggagtagttgtgacaacatatgaaggagtgcatactcacc |
219 |
Q |
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| T |
9607972 |
aggtgcacacatcaagggtgcaatgtaaagaaacaagtgcaacggttaaccaaagatgagggagttgtggtgacaacatatgaaggagtgcatactcacc |
9608071 |
T |
|
| Q |
220 |
ctattgagaaaacaactgataactttgagcatattttgagtcagatgcaaatatacactcccttttgaagcttcatattaatcaattggatcaatttgaa |
319 |
Q |
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| T |
9608072 |
ctattgagaaaacaactgataactttgagcatattttgagtcagatgcaaatatacactccattctaaatcttcata-taatcaattggatcaatttgaa |
9608170 |
T |
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| Q |
320 |
gaaactagcacatgaacttcttatatatgccatgttaattagatcaatttgaggctcttagtttagttcctcctttg |
396 |
Q |
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| T |
9608171 |
gaaactagcacatgaacttct--tacatgccatgttaattagatcaatttgaggctcttagtttagttcctcctttg |
9608245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Original strand, 9835443 - 9835816
Alignment:
| Q |
20 |
aatagggtttaaaatagggttttaaagttttaaagtatacatgatattaacaaatatattgattccattggttttgttaatattttgcaggagctactat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9835443 |
aatagggtttaaaatagggttttaaagttttaaagtatacatgatattaacaaatatattgattccattggttttgttaatattttgcaggagctactat |
9835542 |
T |
|
| Q |
120 |
aggtgcacacatcaagggtgcaatgtaaagaaacaagtgcaacggttaaccaaagatgagggagtagttgtgacaacatatgaaggagtgcatactcacc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
9835543 |
aggtgcacacatcaagggtgcaatgtaaagaaacaagtgcaacggttaaccaaagatgagggagttgtggtgacaacatatgaaggagtgcatactcacc |
9835642 |
T |
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| Q |
220 |
ctattgagaaaacaactgataactttgagcatattttgagtcagatgcaaatatacactcccttttgaagcttcatattaatcaattggatcaatttgaa |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||||| |||||||||||||||||||||| |
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| T |
9835643 |
ctattgagaaaacaactgataactttgagcatattttgagtcagatgcaaatatacactccattctaaatcttcata-taatcaattggatcaatttgaa |
9835741 |
T |
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| Q |
320 |
gaaactagcacatgaacttcttatatatgccatgttaattagatcaatttgaggctcttagtttagttcctcctttg |
396 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9835742 |
gaaactagcacatgaacttct--tacatgccatgttaattagatcaatttgaggctcttagtttagttcctcctttg |
9835816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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