View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_14 (Length: 394)
Name: NF3648_high_14
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Complemental strand, 10785412 - 10785060
Alignment:
| Q |
11 |
caaagggcaaaatgtacaacaataaagaatgttcatggaccatgttaaggggtttacccggtgatgctagcgttgattggaaaatgagcatacacaaacc |
110 |
Q |
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| T |
10785412 |
caaagagcaaaatgtacaacaataaagaatgttcatggaccatgttaaggggtttacatggtgatgctagcgttgattggaaaatgagcatacacaaacc |
10785313 |
T |
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| Q |
111 |
tcatcttgtagcgaaaacccttggtgacaccagtgatgagattctcgacgtggttgagagcagtcctgttagcggtggaggttttccgggaaccaaacca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
10785312 |
tcatcttgtagcgaaaacccttggtgacaccagtgatgagattctcgacgtggctgagagcagtcccgttggcggtggaggttttctgggaaccaaacca |
10785213 |
T |
|
| Q |
211 |
ggcatcgatcttgagcttcttcttgccttcttcatcggtgatgagatcaaaatcaaggttaagatgcttgaaatcacgaacaagcttcccgcgaggtcct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10785212 |
ggcatcgatcttgagcttcttcttgccttcttcatcggtgatgagatcaaaatcaaggttaagatgcttgaaatcacgaacaagcttcccgcgaggtcct |
10785113 |
T |
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| Q |
311 |
tcgacttcgatgaccttagcgttaaccttgtaaacgcgattttagacccaaac |
363 |
Q |
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| T |
10785112 |
tcgacttcgatgaccttagcgctaaccttgtaaacgcgattttagacccaaac |
10785060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 70 - 340
Target Start/End: Complemental strand, 42567098 - 42566828
Alignment:
| Q |
70 |
ggtgatgctagcgttgattggaaaatgagcatacacaaacctcatcttgtagcgaaaacccttggtgacaccagtgatgagattctcgacgtggttgaga |
169 |
Q |
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| T |
42567098 |
ggtgatgctagcgttgatggggaaatgagcatacacaaacctcatcttgtagcggaatcccttggtgacaccagtgatgagattctcaacgtggctgaga |
42566999 |
T |
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| Q |
170 |
gcagtcctgttagcggtggaggttttccgggaaccaaaccaggcatcgatcttgagcttcttcttgccttcttcatcggtgatgagatcaaaatcaaggt |
269 |
Q |
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| T |
42566998 |
gctgtcctgatggcggcggaggttttcctggaaccaaaccaggcatcgatcttcagcttcttcttcccttcttcatcggtgatgagatcaaaatcgagat |
42566899 |
T |
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| Q |
270 |
taagatgcttgaaatcacgaacaagcttcccgcgaggtccttcgacttcgatgaccttagcgttaaccttg |
340 |
Q |
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| T |
42566898 |
tgagatgcttgaaatcacgaacaagtttcccgcgaggtccttcgacttcgatgaccttagcgttaaccttg |
42566828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 42567781 - 42567725
Alignment:
| Q |
12 |
aaagggcaaaatgtacaacaataaagaatgttcatggaccatgttaaggggtttacc |
68 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
42567781 |
aaagagcaaaatgtacaacaataaagcatgttcatggaccatgttaaggggtgtacc |
42567725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 29137216 - 29137424
Alignment:
| Q |
77 |
ctagcgttgattggaaaatgagcatacacaaacctcatcttgtagcgaaaacccttggtgacaccagtgatgagattctcgacgtggttgagagcagtcc |
176 |
Q |
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| T |
29137216 |
ctagcattgatgggaaaatgtgcatatacaaaacgcatcttgtaacggtaacccttagtaacaccagtgatgagattatcaacatgactaagagcagttc |
29137315 |
T |
|
| Q |
177 |
tgttagcggtggaggttttccgggaaccaaaccaggcatcgatcttgagcttcttcttgccttcttcatcggtgatgagatcaaaatcaaggttaagatg |
276 |
Q |
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| T |
29137316 |
gaatagcagcagaggttttcctagatccaaaccaagcttcaacctttagcttcttcttcccctcttcatctgtaattagctgaaaatcgagattcaaatg |
29137415 |
T |
|
| Q |
277 |
cttgaaatc |
285 |
Q |
| |
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||||||||| |
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| T |
29137416 |
cttgaaatc |
29137424 |
T |
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