View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_16 (Length: 388)
Name: NF3648_high_16
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 43901292 - 43901660
Alignment:
| Q |
1 |
cccactgtcacaatacatggatttgatgagaagccaatgtgatcccaaaaacaaggcgtccaaggttgcaatatgattgtccaagatagacatacagcta |
100 |
Q |
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| T |
43901292 |
cccactgtcacaatacatggatttgatgagaagccaatgtgatcccaaaaacaaggcgtccaaggttgcaatatgattgtccaagatagacatacagcta |
43901391 |
T |
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| Q |
101 |
cacaaaaaatacgatcaattatgttaatttaatttgactgatatggattgatagggattgcaggaactaattttctaacaagtgattagtttgcacatat |
200 |
Q |
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| T |
43901392 |
cacaaaaaatacgatcaattctgttaatttaatttgactgatatggattgatagggattgcaggaactaattttctaacaagtgattagtttgcacatat |
43901491 |
T |
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| Q |
201 |
taattctaaatttgcaggctaagacatattatagattcagaggaatagttaagttatataccctgatactttggcataaggccactgtccattagaggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43901492 |
taattctaaatttgcaggctaagacatattatagattcagagtaatagttaagttatataccctgatactttggcataaggccactgtccattagaggac |
43901591 |
T |
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| Q |
301 |
ttacactagtttgaccactcgtggaggaacaacaccaactccactacatacgaacgctccataccatac |
369 |
Q |
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| T |
43901592 |
ttacactagtttgaccactcgtggaggaacaacaccaactccaccacatatgaacgctccataccatac |
43901660 |
T |
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