View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_high_2 (Length: 605)

Name: NF3648_high_2
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_high_2
NF3648_high_2
[»] chr7 (6 HSPs)
chr7 (190-591)||(354367-354768)
chr7 (239-591)||(10580750-10581116)
chr7 (9-113)||(354845-354949)
chr7 (408-591)||(10575350-10575532)
chr7 (9-113)||(10581244-10581348)
chr7 (411-483)||(39954885-39954957)
[»] chr3 (7 HSPs)
chr3 (407-590)||(21584633-21584815)
chr3 (411-581)||(25085011-25085180)
chr3 (411-581)||(24923500-24923669)
chr3 (411-581)||(24497299-24497468)
chr3 (411-581)||(31825597-31825766)
chr3 (414-581)||(24919929-24920095)
chr3 (411-581)||(24982019-24982188)
[»] chr8 (1 HSPs)
chr8 (407-591)||(14261068-14261251)
[»] chr4 (2 HSPs)
chr4 (407-590)||(22898517-22898699)
chr4 (407-590)||(22950185-22950367)
[»] chr2 (1 HSPs)
chr2 (407-502)||(41027623-41027718)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 190 - 591
Target Start/End: Complemental strand, 354768 - 354367
Alignment:
Q  190 ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaannnnnnnagtcaagggattaacataagttagaatcagagttcaccatgaaagatcatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354768 ctgtacttcatcgaaaccaaattaaactgtgtatttgtctaatttttttagtcaagggattaacataagttagaatcagagttcaccatgaaagatcatt 354669  T
Q  290 tcattagattacaatgataacaattgtacggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactg 389  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354668 tcattagattacaatgataacaattgtatggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactg 354569  T
Q  390 tagagggttcttccctgataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaaga 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  354568 tagagggttcttccctgataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaaga 354469  T
Q  490 aaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattc 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354468 aaatcttcaacactcctcttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattc 354369  T
Q  590 ct 591  Q
    ||    
T  354368 ct 354367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 239 - 591
Target Start/End: Complemental strand, 10581116 - 10580750
Alignment:
Q  239 agtcaagggattaacataagttagaatcagagttcaccatgaaagatcatttcattagattacaat--------------------gataacaattgtac 318  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||                    |||||||||| |||    
T  10581116 agtcaagggattaacataagttagaatcagaattcaccatgaaagatcatttcattatattacaatcttgataaaacttacaaaacgataacaattatac 10581017  T
Q  319 ggaacactcacatgctacaaatacaaagaaacaacataacaaatcttcatcttcttcatccaccaaaactgtagagggttcttccctgataaacaacatc 418  Q
    |||||||||||||| | |||||||| ||||||| | |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  10581016 ggaacactcacatgtttcaaatacacagaaacagcttaacaaatcttcatcttcttcatccaccaaaaccatagagggttcttccctgataaacaacatc 10580917  T
Q  419 catagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttatttcctca 518  Q
    |||||||||||||||||||||| |     |||||||||||||||||||||||  ||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10580916 catagcagtcagagtcttcctcat-----gctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctca 10580822  T
Q  519 tagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcct 591  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10580821 tagatcaaa-ccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctttgttattcct 10580750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 354949 - 354845
Alignment:
Q  9 caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354949 caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca 354850  T
Q  109 ctcac 113  Q
    |||||    
T  354849 ctcac 354845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 408 - 591
Target Start/End: Complemental strand, 10575532 - 10575350
Alignment:
Q  408 taaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctc 507  Q
    |||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |  ||  |||||| |||||| ||||||||||| ||||    
T  10575532 taaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctc 10575433  T
Q  508 ttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcct 591  Q
    || |||||||||||| | || |||||||| || |||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  10575432 ttgtttcctcataga-tcaatccactgattcttttcacacctcctcttctcgccaatcgacgaatcgctggctttgtgattcct 10575350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 10581348 - 10581244
Alignment:
Q  9 caaaggtacggattttagtcgattcatcgatttccaaaggaacacctgtgcatccacgacgttaaaataacaaaactactaaaaatcaagttaacaaaca 108  Q
    ||||| || |||||||||| |||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||  ||||||||||||||||||||    
T  10581348 caaagatatggattttagtggattcatcaatttccaaaggaacacctgcgcatccactaagttaaaataacaaaactaaaaaaaatcaagttaacaaaca 10581249  T
Q  109 ctcac 113  Q
    |||||    
T  10581248 ctcac 10581244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 483
Target Start/End: Original strand, 39954885 - 39954957
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattct 483  Q
    ||||||||||| || || | ||| |||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  39954885 acaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct 39954957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 407 - 590
Target Start/End: Original strand, 21584633 - 21584815
Alignment:
Q  407 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 506  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||||| |||| |||||| |||||||||||| |  ||||||    
T  21584633 ataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcct 21584732  T
Q  507 cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcc 590  Q
    ||| |||||||||| | | ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| || |||||    
T  21584733 cttgtttcctcata-aatcaaaccactgattctcttaacaccacctcttctcgccaatcgacgaatcgctggcttggtgattcc 21584815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 411 - 581
Target Start/End: Complemental strand, 25085180 - 25085011
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 510  Q
    ||||||||||| || |||| |||||||||||||||  |||||||||| ||||| |||||||  ||| |||||| |||||| |||||||| || |||||      
T  25085180 acaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctccaagaagatcttcaagacacctctgg 25085081  T
Q  511 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    |||| ||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  25085080 tttcttcatatatcaaa-ccactgattctcttcacaccacctcttctcgccaatctacgaatggcaggctt 25085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 411 - 581
Target Start/End: Original strand, 24923500 - 24923669
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 510  Q
    ||||||||||| || ||||  ||||||||||||||  |||||||||| || |||||||||| |||  |||||| |||||| |||||||| || |||||      
T  24923500 acaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctgg 24923599  T
Q  511 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    |||| ||||||| | ||||||||||| ||||| |||||||||||||| ||||||| |||||| || |||||    
T  24923600 tttcttcataga-tcaaaccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 24923669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 581
Target Start/End: Original strand, 24497299 - 24497468
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 510  Q
    ||||||||||| || |||| |||||||||||||||  |||||||||| ||||| |||||||  ||| |||| | |||||| |||||||| || |||||      
T  24497299 acaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattttccaagaagatcttcaagacacctctgg 24497398  T
Q  511 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    |||| ||||||| | || |||||||| ||||| |||||||||||||| ||||||| |||||| || |||||    
T  24497399 tttcttcataga-tcaatccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 24497468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 581
Target Start/End: Original strand, 31825597 - 31825766
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 510  Q
    ||||||||||| || || |  ||||||||||| ||  |||||||||| || || |||||||  ||  |||||| |||||| |||||||| || |||||      
T  31825597 acaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctctag 31825696  T
Q  511 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  31825697 tttcttcatagatcaaa-ccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 31825766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 414 - 581
Target Start/End: Original strand, 24919929 - 24920095
Alignment:
Q  414 acatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctcttattt 513  Q
    |||||||| || ||||  ||||||||||| ||  |||||||||| || |||||||||| |||  ||||||  ||||| |||||||| || |||||  |||    
T  24919929 acatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatcacgaatgacattctctaagaagatcttcaagacacctctggttt 24920028  T
Q  514 cctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    | |||||||| ||| || ||||| |||||||||||||||||||| ||||||| |||||| || |||||    
T  24920029 cttcatagatcaaa-ccgctgattctcttcacaccacctcttcttgccaatcgacgaattgcaggctt 24920095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 411 - 581
Target Start/End: Complemental strand, 24982188 - 24982019
Alignment:
Q  411 acaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 510  Q
    ||||||||||| || || | |||||||||||| ||  |||||||||| ||||| |||||||  ||  |||||| |||||| |||||||| || |||||      
T  24982188 acaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacggatgacattctccaagaagatcttcaagacacctctgg 24982089  T
Q  511 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctt 581  Q
    |||| ||||| || ||| |||||||| ||||| |||||||||||||| ||||||| |||||| || |||||    
T  24982088 tttcttcatatatcaaa-ccactgattctcttaacaccacctcttcttgccaatcgacgaatagcaggctt 24982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 407 - 591
Target Start/End: Original strand, 14261068 - 14261251
Alignment:
Q  407 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 506  Q
    ||||||||||||||||||||| |  ||||||||||| ||| | ||||| || ||||||||||| |  ||| |||||| |||||||||||||||||| ||     
T  14261068 ataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccg 14261167  T
Q  507 cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcct 591  Q
    |   |||| ||||| | | || || ||||| ||||||||||| ||||||||||| ||||  ||||||||||||||||| ||||||    
T  14261168 cgagtttcttcata-aatcaacccgctgattctcttcacacctcctcttctcgctaatcgccgaatcgctggctttgtgattcct 14261251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 407 - 590
Target Start/End: Complemental strand, 22898699 - 22898517
Alignment:
Q  407 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 506  Q
    |||||| |||||||||||||| |  |||||||| || ||  ||||||||||||| |||||||| | |||| |||||| ||| || ||||||||||| ||     
T  22898699 ataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcca 22898600  T
Q  507 cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcc 590  Q
    | | | |||||||| | | ||||||||||| | |||||| || ||||| |  || |  | ||||||||||||||||||||||||    
T  22898599 cgtgtctcctcata-aatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattcc 22898517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 407 - 590
Target Start/End: Complemental strand, 22950367 - 22950185
Alignment:
Q  407 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 506  Q
    |||||| |||||||||||||| |  |||||||| || ||  ||||||||||||| |||||||| | |||| |||||| ||| || ||||||||||| ||     
T  22950367 ataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacattctccaaaaatatcttcaacacgcca 22950268  T
Q  507 cttatttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattcc 590  Q
    | | | |||||||| | | ||||||||||| | |||||| || ||||| |  || |  | ||||||||||||||||||||||||    
T  22950267 cgtgtctcctcata-aatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaatcgctggctttgttattcc 22950185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 407 - 502
Target Start/End: Complemental strand, 41027718 - 41027623
Alignment:
Q  407 ataaacaacatccatagcagtcagagtcttcctccttgcacgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacac 502  Q
    ||||||||||||||||||||| | |||||| ||||| ||  |||| ||||||||||||||||||| |||  |||||| ||| || |||||||||||    
T  41027718 ataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctccaaaaagatcttcaacac 41027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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