View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_high_21 (Length: 361)

Name: NF3648_high_21
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_high_21
NF3648_high_21
[»] chr7 (1 HSPs)
chr7 (15-345)||(34839880-34840210)
[»] chr2 (2 HSPs)
chr2 (21-163)||(11733514-11733656)
chr2 (272-345)||(11734149-11734222)
[»] chr4 (7 HSPs)
chr4 (15-163)||(38178404-38178552)
chr4 (272-345)||(5530740-5530813)
chr4 (272-345)||(5922989-5923062)
chr4 (284-346)||(5936410-5936472)
chr4 (12-127)||(5531903-5532018)
chr4 (12-127)||(5935475-5935590)
chr4 (272-345)||(38178788-38178861)
[»] chr8 (3 HSPs)
chr8 (275-346)||(40919570-40919641)
chr8 (27-154)||(40917096-40917223)
chr8 (15-168)||(45319608-45319761)
[»] chr1 (2 HSPs)
chr1 (28-88)||(3738857-3738917)
chr1 (18-136)||(45453232-45453350)
[»] chr3 (2 HSPs)
chr3 (15-142)||(53146787-53146914)
chr3 (272-321)||(53148141-53148190)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 34840210 - 34839880
Alignment:
Q  15 ggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34840210 ggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcaggatattcctctctaatcttcgaaatcaacaaag 34840111  T
Q  115 ttcccattccagatcccgtacctcctcccaacgaatgacacacctgaaaccctaaaaaccgcaaaatcacaaaatgcaaaattagtaaccgccataacag 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34840110 ttcccattccagatcccgttcctcctcccaacgaatgacacacctgaaaccctaaaaaccgcaaaatcacaaaatacaaaattagtaaccgccataacag 34840011  T
Q  215 aatcaagatttccacaagtgtactaaatcgcacaagaaatagattgtaccttgaagacaatcgcaattctcagcttctttacgaacaacatcgagaactg 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34840010 aatcaagatttccacaagtgtactaaatcgcacaagtaatagattgtaccttgaagacaatcgcaattctcagcttctttacgaacaacatcgagaactg 34839911  T
Q  315 aatcaataagttcagcgccttcagtgtaatg 345  Q
    |||||||||||||||||||||||||||||||    
T  34839910 aatcaataagttcagcgccttcagtgtaatg 34839880  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 11733514 - 11733656
Alignment:
Q  21 acaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaagttccca 120  Q
    ||||| |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||||||| |  |||||||    
T  11733514 acaaccgtatcagacaccttaggtgaaggaaacaccgaaaacgtcaacatcatacgatccggatattcttctcgaatcttcgaaatcaaaagtgttccca 11733613  T
Q  121 ttccagatcccgtacctcctcccaacgaatgacacacctgaaa 163  Q
    | || || ||||| || |||||||| ||||||||||| |||||    
T  11733614 tgcctgaacccgtgccacctcccaatgaatgacacacttgaaa 11733656  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 11734149 - 11734222
Alignment:
Q  272 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatg 345  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||    
T  11734149 caatcacaattctcagcttctttacgaacaacatcaagaacagaatcaataagctcagcgccttcggtataatg 11734222  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 163
Target Start/End: Original strand, 38178404 - 38178552
Alignment:
Q  15 ggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaag 114  Q
    ||||| ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| | ||| ||||| || || |||||||||||||| |  |  |    
T  38178404 ggctccacaactgtatctgaaaccttaggtgaaggaaacacagaaaacgtcaacatcatacgatccggatactcttccctaatcttcgaaataagaagtg 38178503  T
Q  115 ttcccattccagatcccgtacctcctcccaacgaatgacacacctgaaa 163  Q
    ||||||||||||| || || || |||||||| ||||||||||| |||||    
T  38178504 ttcccattccagaaccagttccacctcccaatgaatgacacacttgaaa 38178552  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 345
Target Start/End: Complemental strand, 5530813 - 5530740
Alignment:
Q  272 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatg 345  Q
    ||||| ||||||||||||||||| | ||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  5530813 caatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatg 5530740  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 5922989 - 5923062
Alignment:
Q  272 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatg 345  Q
    ||||| ||||||||||||||||| | ||||||||| ||||| ||||||||||| |||||||||||||| |||||    
T  5922989 caatcacaattctcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtataatg 5923062  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 5936410 - 5936472
Alignment:
Q  284 tcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgt 346  Q
    ||||||||||| | ||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  5936410 tcagcttctttcctaacaacatcaagaacagaatcaataagctcagcgccttcagtgtaatgt 5936472  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 5532018 - 5531903
Alignment:
Q  12 tagggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaaca 111  Q
    ||||| ||||| ||||| ||||||||||| |||||||| || || || || || | ||||||||| || || ||||| || || ||||| |||||||  |    
T  5532018 tagggttcaaccacagtgtcagaaaccttaggagaagggaaaacagagaaagtaagcatcatcctgtctgggtattcttccctgatctttgaaatcagaa 5531919  T
Q  112 aagttcccattccaga 127  Q
     |||||||||||||||    
T  5531918 gagttcccattccaga 5531903  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 5935475 - 5935590
Alignment:
Q  12 tagggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaaca 111  Q
    ||||| ||||| ||||| ||||||||||| |||||||| || || || || || | |||||||||||| || ||||| || || ||||| |||||||| |    
T  5935475 tagggttcaaccacagtgtcagaaaccttaggagaagggaaaacagagaaagtaagcatcatcctatctgggtattcttccctgatctttgaaatcaaaa 5935574  T
Q  112 aagttcccattccaga 127  Q
      || |||||||||||    
T  5935575 gggtacccattccaga 5935590  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 38178788 - 38178861
Alignment:
Q  272 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatg 345  Q
    ||||||||||||||||| ||||| |  |||||||| | ||| |||||||| |  ||||||||||| ||||||||    
T  38178788 caatcgcaattctcagcctctttcctcacaacatccaaaacggaatcaatcaactcagcgccttcggtgtaatg 38178861  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 40919570 - 40919641
Alignment:
Q  275 tcgcaattctcagcttctttacgaacaacatcgagaactgaatcaataagttcagcgccttcagtgtaatgt 346  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  40919570 tcgcaattctcagcttcttttcgaacaacatcaagaacagaatcaataagttcagctccttcagtgtaatgt 40919641  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 40917096 - 40917223
Alignment:
Q  27 gtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaagttcccattccag 126  Q
    |||||||||||||| || ||||| ||||| || || ||||||||||| || || ||||| || ||||| ||||| ||||| | ||| || |||||||| |    
T  40917096 gtatcagaaacctttggtgaagggaacactgagaaagtcaacatcattctgtctggatactcttctctgatcttggaaatgagcaaggtacccattcctg 40917195  T
Q  127 atcccgtacctcctcccaacgaatgaca 154  Q
    |||| || || ||||| | |||||||||    
T  40917196 atccagttccacctccaagcgaatgaca 40917223  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 45319761 - 45319608
Alignment:
Q  15 ggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaag 114  Q
    ||||||||||| || || || ||||| ||||| ||||| || || || || | |||||| | ||| || ||||| ||||| ||||| ||||| |  | ||    
T  45319761 ggctcaacaactgtgtctgacacctttggagatggaaagacagagaaagtgagcatcattcgatcagggtattcttctctgatctttgaaatgagtagag 45319662  T
Q  115 ttcccattccagatcccgtacctcctcccaacgaatgacacacctgaaacccta 168  Q
    ||||||||||||| ||||| ||||||||||| || || ||||| ||||| ||||    
T  45319661 ttcccattccagaacccgttcctcctcccaaggagtggcacacttgaaatccta 45319608  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 3738917 - 3738857
Alignment:
Q  28 tatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattc 88  Q
    |||||||||||||||| |||||||||| |||||||||||||| ||||||||| ||||||||    
T  3738917 tatcagaaaccttcggtgaaggaaacatcgaaaacgtcaacaacatcctatcaggatattc 3738857  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 45453232 - 45453350
Alignment:
Q  18 tcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaagttc 117  Q
    ||||||||||| ||||| ||||| ||||| || ||||| || || || | |||||| | ||| || |||||||| || ||||| |||||||| |  ||||    
T  45453232 tcaacaacagtgtcagataccttaggagatgggaacacagagaaagtaagcatcattcgatcagggtattcctccctgatcttagaaatcaaaagtgttc 45453331  T
Q  118 ccattccagatcccgtacc 136  Q
    |||||||||| || |||||    
T  45453332 ccattccagaaccagtacc 45453350  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 53146787 - 53146914
Alignment:
Q  15 ggctcaacaacagtatcagaaaccttcggagaaggaaacaccgaaaacgtcaacatcatcctatcgggatattcctctctaatcttcgaaatcaacaaag 114  Q
    ||||||||||| || ||||| ||||| ||||| || || || || || || | |||||| || || ||||||||||| |||||||| || ||||| |  |    
T  53146787 ggctcaacaactgtgtcagatacctttggagatgggaaaacagagaaagtaagcatcattctgtctggatattcctccctaatctttgatatcaatagtg 53146886  T
Q  115 ttcccattccagatcccgtacctcctcc 142  Q
    ||||||| ||||| ||||| ||||||||    
T  53146887 ttcccatgccagaacccgtgcctcctcc 53146914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 53148141 - 53148190
Alignment:
Q  272 caatcgcaattctcagcttctttacgaacaacatcgagaactgaatcaat 321  Q
    ||||| |||||||| |||||||||||||||||||| ||||| || |||||    
T  53148141 caatcacaattctctgcttctttacgaacaacatcaagaacagagtcaat 53148190  T

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