View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_high_22 (Length: 360)

Name: NF3648_high_22
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_high_22
NF3648_high_22
[»] chr8 (16 HSPs)
chr8 (114-277)||(12178858-12179021)
chr8 (114-277)||(12423286-12423449)
chr8 (114-277)||(12190553-12190716)
chr8 (114-277)||(12434981-12435144)
chr8 (20-79)||(12189475-12189534)
chr8 (20-79)||(12433903-12433962)
chr8 (297-342)||(12190742-12190787)
chr8 (297-342)||(12435170-12435215)
chr8 (297-341)||(12179050-12179094)
chr8 (297-341)||(12423478-12423522)
chr8 (119-177)||(5568633-5568691)
chr8 (119-177)||(13164330-13164388)
chr8 (114-180)||(5598526-5598592)
chr8 (114-180)||(5636683-5636749)
chr8 (139-180)||(5572753-5572794)
chr8 (131-180)||(6313834-6313883)
[»] chr7 (1 HSPs)
chr7 (30-79)||(16332963-16333012)
[»] chr1 (1 HSPs)
chr1 (32-79)||(3461359-3461406)
[»] chr5 (1 HSPs)
chr5 (217-275)||(16473605-16473663)
[»] chr6 (1 HSPs)
chr6 (30-79)||(30148135-30148184)


Alignment Details
Target: chr8 (Bit Score: 136; Significance: 7e-71; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12178858 - 12179021
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12178858 ctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12178957  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12178958 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12179021  T

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Target: chr8; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12423286 - 12423449
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12423286 ctttaattgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12423385  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12423386 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12423449  T

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Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12190553 - 12190716
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12190553 ctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12190652  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12190653 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12190716  T

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Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 114 - 277
Target Start/End: Original strand, 12434981 - 12435144
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggtttcgatgtggtttctacgcaaagcttcatgaag 213  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||  |||||||    
T  12434981 ctttaattgctctttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggtttcgatgtggtttttacacaaagccgcatgaag 12435080  T
Q  214 aaagcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttttg 277  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12435081 aaagcttgtaaaattggtgcgagtatcctcccctctaaaactgataaaaacatcgtgttttttg 12435144  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12189475 - 12189534
Alignment:
Q  20 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12189475 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcgtatttttct 12189534  T

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Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 12433903 - 12433962
Alignment:
Q  20 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12433903 gatgtaaggttttgtataaacgatttgattgctaatgaactgctgtaagcgtatttttct 12433962  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 12190742 - 12190787
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagatacac 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  12190742 ccatagccatctttgaatgtttatgctttggttgtggaagatacac 12190787  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 342
Target Start/End: Original strand, 12435170 - 12435215
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagatacac 342  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  12435170 ccatagccatctttgaatgtttatgctttggttgtggaagatacac 12435215  T

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Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 12179050 - 12179094
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagataca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12179050 ccataactatctttgaatgtttatgctttggttgtggaagataca 12179094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 12423478 - 12423522
Alignment:
Q  297 ccatagctatctttgaatgtttatgctttggttgtggaagataca 341  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  12423478 ccataactatctttgaatgtttatgctttggttgtggaagataca 12423522  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 5568691 - 5568633
Alignment:
Q  119 attgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgta 177  Q
    |||||||| |||||||||  |||||| || |||||||| ||||||||||||||||||||    
T  5568691 attgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgta 5568633  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 13164388 - 13164330
Alignment:
Q  119 attgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgta 177  Q
    |||||||| | ||||||| ||||||| || ||||||||||||||||| |||||||||||    
T  13164388 attgctttctgaagttctccccaaacttcatctcctttttcgatcctgtagtctatgta 13164330  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 5598526 - 5598592
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||| ||||||||  ||||||||  |||||| || |||||||| ||||||||||| |||||||||||    
T  5598526 ctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggt 5598592  T

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Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 5636749 - 5636683
Alignment:
Q  114 ctttaattgctttttcaagttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||| ||||||||  ||||||||  |||||| || |||||||| ||||||||||| |||||||||||    
T  5636749 ctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggt 5636683  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 5572794 - 5572753
Alignment:
Q  139 ccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||||| || |||||||||| |||||||||||||||||||||    
T  5572794 ccaaacttcatctcctttttggatcctatagtctatgtaggt 5572753  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6313834 - 6313883
Alignment:
Q  131 agttcttcccaaacctcttctcctttttcgatcctatagtctatgtaggt 180  Q
    |||||| ||||||| || |||||||| |||||||| ||||||||||||||    
T  6313834 agttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggt 6313883  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 16332963 - 16333012
Alignment:
Q  30 tttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||||||||||||||||||| |||| |||||||| ||||||    
T  16332963 tttgtataaacgatttgattgctaatgaaatgctataagcatacttttct 16333012  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 3461359 - 3461406
Alignment:
Q  32 tgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||||||||||||||||| || | |||||||||||||||    
T  3461359 tgtataaacgatttgattgctaatgaaatgttataagcatatttttct 3461406  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 16473605 - 16473663
Alignment:
Q  217 gcttgtaaaattggtgcgagtatcttcccctctaaaactgataaaaacatcgtgttttt 275  Q
    |||||| |||||| |||||||||| || |||||||||||||||||||| ||||| ||||    
T  16473605 gcttgtgaaattgttgcgagtatcctcacctctaaaactgataaaaacttcgtgctttt 16473663  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 30148135 - 30148184
Alignment:
Q  30 tttgtataaacgatttgattgctaatgaactgctgtaagcatatttttct 79  Q
    ||||||||||||| ||||||||||||||| |||| ||||| || ||||||    
T  30148135 tttgtataaacgagttgattgctaatgaaatgctataagcttaattttct 30148184  T

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