View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_28 (Length: 306)
Name: NF3648_high_28
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 50 - 301
Target Start/End: Complemental strand, 23445450 - 23445202
Alignment:
| Q |
50 |
cctcaaaaacgccggctaaccctagcatgcgtctactacctgtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaac |
149 |
Q |
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| T |
23445450 |
cctcaaaaacgccggcgaaccctagcatgcgtctac---cggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaac |
23445354 |
T |
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| Q |
150 |
ctcttcagaaagcaccgtagtgaaaagagacaaaactaggaggacgagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaa |
249 |
Q |
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| T |
23445353 |
ctcttcagaaagcaccgtagtgaaaagagacaaaactaggaggaggagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaa |
23445254 |
T |
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| Q |
250 |
taagttttattgtagaagaaaaattgatgagactaatgtcttaacctttgct |
301 |
Q |
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| T |
23445253 |
taagttttattgtagaagaaaaattgatgagactaatgtcttaacctttgct |
23445202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 23430619 - 23430439
Alignment:
| Q |
91 |
gtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaacctcttcagaaagcaccgtagtgaaaagagacaaaactagga |
190 |
Q |
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| T |
23430619 |
gtggaaggcaatgtcaggtgaacatgggttggagagtaagtggtgggaagattcttaacctcttcagaaagcgccatggtaggaagagtatcaactagga |
23430520 |
T |
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| Q |
191 |
ggacgagcaacactaaggtcatggctttggacattttgatatgcaagagaaagtaaaaataagttttattgtagaagaaaa |
271 |
Q |
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| T |
23430519 |
gcatgagcagcgctaaggtcatgactttggacatttttgtatgcaagagaaagtaataataagctttattgtagaagaaaa |
23430439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 91 - 287
Target Start/End: Complemental strand, 23438677 - 23438480
Alignment:
| Q |
91 |
gtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaagagtctcaacctcttcagaaagcaccgtagtgaaaagagacaaaactagga |
190 |
Q |
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|||||||||||||||| ||||| |||||||| ||||||||| | |||||||||||||||||||| |||||||||||||||| || | | |||||||| |
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| T |
23438677 |
gtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaagagtctcaacctctttagaaagcaccgtagtgggaattgtctcaactagga |
23438578 |
T |
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| Q |
191 |
ggacgagcaacactaaggtcatggctttggaca-ttttgatatgcaagagaaagtaaaaataagttttattgtagaagaaaaattgatgagactaatg |
287 |
Q |
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| T |
23438577 |
gcatgagtaatgctaaggccatgacttttgacatttttcttatgcaagagaaagtaaaaataagctttattattgaagaaaaatggatgtgagtaatg |
23438480 |
T |
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