View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3648_high_32 (Length: 294)
Name: NF3648_high_32
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3648_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 3292777 - 3292954
Alignment:
| Q |
1 |
aaagatatatcacatgccatttgaaacaannnnnnnactgaagcaagcctgcacattgaattttcacactaccatataaaacaattgatttaaataattc |
100 |
Q |
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| T |
3292777 |
aaagatatatcacatgccatttgaaacaatttttt-actgaagcaagcctgcacattgaattttcacacctccatataaaacaattgaagtaaataattc |
3292875 |
T |
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| Q |
101 |
ttcacaaattcatatactattttatttttcttgaaaatattaataattaaatatgcagaggtaaaaacaaaaaggaatt |
179 |
Q |
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| T |
3292876 |
ttcacaaattcatatactattttatttttcttgaaaatattaataattaaatatgcagaggtataaacaaaaaggaatt |
3292954 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 3292954 - 3293022
Alignment:
| Q |
212 |
ttcttttcgaattatacctgattattacaattggtaacttgtaagatggagtatttacagtctcaccaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
3292954 |
ttcttttcgaattatacctgattattacaattggtaacttctaaggtggagtatttacagtctcaccaa |
3293022 |
T |
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