View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3648_high_33 (Length: 282)

Name: NF3648_high_33
Description: NF3648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3648_high_33
NF3648_high_33
[»] chr4 (1 HSPs)
chr4 (1-270)||(18925116-18925385)
[»] chr7 (12 HSPs)
chr7 (1-267)||(4667396-4667662)
chr7 (29-270)||(4631379-4631626)
chr7 (165-270)||(4711607-4711715)
chr7 (1-50)||(4783206-4783255)
chr7 (1-50)||(4815635-4815684)
chr7 (1-46)||(4637533-4637578)
chr7 (1-46)||(4663369-4663414)
chr7 (1-46)||(4864604-4864649)
chr7 (165-225)||(4637357-4637417)
chr7 (1-46)||(4644374-4644419)
chr7 (1-46)||(4696549-4696594)
chr7 (170-270)||(4696730-4696833)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 18925116 - 18925385
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||  |||||||| ||||||||||||||||||     
T  18925116 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaat 18925215  T
Q  101 gactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttca 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18925216 gactttaaccccgcactttggcttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttca 18925315  T
Q  201 ttccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 270  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18925316 ttccaaacaccataaatcaaccaaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 4667662 - 4667396
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||  ||| |||| |||  | ||||||||||||    
T  4667662 ttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttacccttctcaaa 4667563  T
Q  101 gactttaaccccgcactttggtttcaaaacgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttca 200  Q
    ||||||| |||  |||||||| ||| ||||||||||||||||||||| ||||| || ||| || | |  |||| | | |||||  || |  |||||||||    
T  4667562 gactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggagaaactagacgtaactttca 4667463  T
Q  201 ttccaaacaccataaatcaatcaaaggcttatgctttcatcaacggaattgagatcgtgtccatgcc 267  Q
    |||| || | || ||| |||| ||| |||| |||||||||||||||||||||||| ||||| |||||    
T  4667462 ttcccaaaaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 4631626 - 4631379
Alignment:
Q  29 tcgtatcaaaactttgaaacctataacgccctcttcaccgtcgtagttggaaacaatgtcacccttctcaaagactttaaccccgcactttggtttcaaa 128  Q
    ||||||||| || |||||||||  |||||||||||||| |||  ||| |||| |||  | |||||||||||||||||||| ||| | |||||| ||  ||    
T  4631626 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 4631527  T
Q  129 acgataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaagtgagaagttaaatataactttcattcc---aaacac---cataaatcaatc 222  Q
    |||||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| ||||     
T  4631526 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 4631427  T
Q  223 aaaggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 270  Q
    ||| | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  4631426 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 270
Target Start/End: Original strand, 4711607 - 4711715
Alignment:
Q  165 aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 261  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| ||||||||| |||||  |   |||||||||||| |||||||| || || |||||    
T  4711607 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 4711706  T
Q  262 catgccttc 270  Q
     ||||||||    
T  4711707 tatgccttc 4711715  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4783206 - 4783255
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct 50  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  4783206 ttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct 4783255  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4815635 - 4815684
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct 50  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  4815635 ttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct 4815684  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4637578 - 4637533
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 46  Q
    ||||||||| |||||||||||||| ||||| |||||||||||||||    
T  4637578 ttttcttcgtcttcatttttaccctacatcttatcaaaactttgaa 4637533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4663414 - 4663369
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 46  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||    
T  4663414 ttttcttcgccttcatttttactcaacatcttataaaaactttgaa 4663369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4864649 - 4864604
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 46  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||    
T  4864649 ttttgttcgtcttcatttttacccaacatcttatcaaaactttgaa 4864604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 4637417 - 4637357
Alignment:
Q  165 aaatgaaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaa 225  Q
    |||| ||||||| ||| |||||||| |||||||||||||| |||| |||||| ||||||||    
T  4637417 aaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaatcaaa 4637357  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4644419 - 4644374
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 46  Q
    ||||||||||||| ||||||||||  ||||||||||||| ||||||    
T  4644419 ttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaa 4644374  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4696549 - 4696594
Alignment:
Q  1 ttttcttcgccttcatttttacccaacatcgtatcaaaactttgaa 46  Q
    |||||||||||||||||||||||| || ||||| | ||||||||||    
T  4696549 ttttcttcgccttcatttttacccgacttcgtaccgaaactttgaa 4696594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 4696730 - 4696833
Alignment:
Q  170 aaaccaagtgagaagttaaatataactttcattccaaacaccataaatcaatcaaaggc---ttatgctttcatcaacggaattgagatcgtgtccatgc 266  Q
    ||||||| |||||||||||| |||||||||||||| | || |||||| || |||||  |   |||||||||||| |||||||| ||  | ||||| ||||    
T  4696730 aaaccaaatgagaagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgc 4696829  T
Q  267 cttc 270  Q
    ||||    
T  4696830 cttc 4696833  T

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